View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_26 (Length: 284)
Name: NF6547_low_26
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 26002233 - 26001967
Alignment:
| Q |
1 |
ttcctaaacaaaattttatttttcgtctcctnnnnnnngtgacacacgttggtccatatatatttttctgcatgaagttttagtccctacgaaattcaat |
100 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26002233 |
ttcctaaacaaaattttatttttggtctcctaaaaaacgtgacacacgttggtccatatatatttttctgcatgaagttttagtccctacgaaattcaat |
26002134 |
T |
|
| Q |
101 |
gccagaattccattatatttgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26002133 |
gccagaattccattatatttgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttctt |
26002034 |
T |
|
| Q |
201 |
acaatacacagaaaatccagctccctccacctcaacaacatccttcgccgtcgtcggagacggtgca |
267 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26002033 |
acaatacacagaaaatccatctccctccacctcaacaacatccttcgccgtcgtcggagacggtgca |
26001967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 26017157 - 26017029
Alignment:
| Q |
120 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
219 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26017157 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
26017058 |
T |
|
| Q |
220 |
gctccctccacctcaacaacatccttcgc |
248 |
Q |
| |
|
|||| || |||||||||||||||||||| |
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| T |
26017057 |
tctccttctacctcaacaacatccttcgc |
26017029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 30373276 - 30373224
Alignment:
| Q |
197 |
tcttacaatacacagaaaatccagctccctccacctcaacaacatccttcgcc |
249 |
Q |
| |
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|||||||||| |||||| | ||| |||||||| |||||||||||||| ||||| |
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| T |
30373276 |
tcttacaataaacagaatacccatctccctccgcctcaacaacatccctcgcc |
30373224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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