View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_low_3 (Length: 692)

Name: NF6547_low_3
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_low_3
NF6547_low_3
[»] chr6 (19 HSPs)
chr6 (161-678)||(31564316-31564843)
chr6 (16-382)||(33385314-33385670)
chr6 (16-382)||(33259583-33259959)
chr6 (419-583)||(33416366-33416536)
chr6 (16-208)||(33416152-33416345)
chr6 (16-201)||(24631975-24632161)
chr6 (60-242)||(9165228-9165418)
chr6 (540-669)||(33385707-33385837)
chr6 (253-359)||(24631864-24631970)
chr6 (1-102)||(31564838-31564932)
chr6 (171-245)||(29274300-29274376)
chr6 (595-654)||(33281320-33281376)
chr6 (612-666)||(33416538-33416592)
chr6 (595-654)||(33301947-33302003)
chr6 (276-351)||(281808-281881)
chr6 (61-102)||(33282241-33282282)
chr6 (61-102)||(33398042-33398083)
chr6 (61-102)||(33408952-33408993)
chr6 (184-259)||(2034496-2034572)
[»] chr5 (8 HSPs)
chr5 (420-574)||(30653203-30653360)
chr5 (171-293)||(11684346-11684468)
chr5 (247-312)||(30653373-30653438)
chr5 (164-245)||(32059660-32059742)
chr5 (164-208)||(10391269-10391313)
chr5 (301-352)||(11457158-11457209)
chr5 (164-203)||(29115328-29115367)
chr5 (172-208)||(19113227-19113263)
[»] scaffold0428 (4 HSPs)
scaffold0428 (146-382)||(3802-4047)
scaffold0428 (16-102)||(3704-3791)
scaffold0428 (595-654)||(12876-12932)
scaffold0428 (61-102)||(11970-12011)
[»] chr2 (8 HSPs)
chr2 (537-666)||(17443374-17443503)
chr2 (317-382)||(17443537-17443602)
chr2 (164-245)||(34339039-34339122)
chr2 (172-212)||(3102617-3102657)
chr2 (277-354)||(14299588-14299663)
chr2 (184-245)||(7103554-7103615)
chr2 (184-245)||(18962109-18962172)
chr2 (336-388)||(43199930-43199982)
[»] chr8 (10 HSPs)
chr8 (276-354)||(13000381-13000457)
chr8 (169-237)||(26717178-26717246)
chr8 (173-259)||(5290566-5290649)
chr8 (164-227)||(26716527-26716590)
chr8 (276-354)||(30191098-30191174)
chr8 (211-297)||(10079082-10079168)
chr8 (248-297)||(30389108-30389157)
chr8 (171-245)||(34788498-34788574)
chr8 (172-208)||(6918955-6918991)
chr8 (175-242)||(8536123-8536191)
[»] chr3 (8 HSPs)
chr3 (276-352)||(43115093-43115167)
chr3 (164-242)||(38462197-38462277)
chr3 (171-244)||(22232749-22232824)
chr3 (155-237)||(3015928-3016011)
chr3 (276-354)||(37273171-37273247)
chr3 (279-375)||(24624250-24624344)
chr3 (172-208)||(16790466-16790502)
chr3 (172-237)||(51278236-51278303)
[»] chr7 (10 HSPs)
chr7 (239-352)||(3468614-3468725)
chr7 (164-245)||(3610811-3610894)
chr7 (172-293)||(26935573-26935696)
chr7 (130-208)||(22388014-22388093)
chr7 (172-237)||(7244626-7244693)
chr7 (164-208)||(23721417-23721461)
chr7 (184-245)||(33894559-33894621)
chr7 (171-244)||(35536030-35536105)
chr7 (276-351)||(39345508-39345581)
chr7 (172-208)||(45078217-45078253)
[»] chr1 (7 HSPs)
chr1 (174-227)||(44207697-44207750)
chr1 (303-354)||(15581316-15581367)
chr1 (164-220)||(11639512-11639568)
chr1 (279-354)||(28837002-28837075)
chr1 (248-292)||(30014095-30014139)
chr1 (189-245)||(44422642-44422698)
chr1 (171-203)||(50764489-50764521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (186-259)||(21335-21410)
[»] chr4 (4 HSPs)
chr4 (173-227)||(32920489-32920543)
chr4 (170-237)||(47970240-47970309)
chr4 (187-257)||(55437345-55437415)
chr4 (277-352)||(9843212-9843285)
[»] scaffold0311 (1 HSPs)
scaffold0311 (276-351)||(10577-10650)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 161 - 678
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  161 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 260  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  261 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 360  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  361 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 454  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  455 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  551 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  651 ttcatcttcaacttgtactaccacaggt 678  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  16 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 114  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  115 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 212  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  213 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 312  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  313 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 382  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  16 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 114  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  115 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 212  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  213 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 305  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  306 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 382  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 419 - 583
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  419 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 516  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  517 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 583  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  16 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 114  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  115 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 208  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  16 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 114  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  115 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 201  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 242
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  60 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 152  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  153 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 242  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 540 - 669
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  540 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 638  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  639 aattgcaacttcttcatcttcaacttgtact 669  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  253 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 352  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  353 ctaatat 359  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31564932 - 31564838
Alignment:
Q  1 ttgcgccttttcatgcaagtgttggtgatatagttgctgcaattcaaaggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaaga 100  Q
    ||||||||||||||| ||||||||||       |||||||||| ||||||||   ||||||||||||||||| || ||| |||||||||||||| |||||    
T  31564932 ttgcgccttttcatgtaagtgttggt-------ttgctgcaatccaaagggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaaga 31564840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  171 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 245  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 595 - 654
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  595 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 654  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 666
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  612 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 666  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 654
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  595 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 654  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 351
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 351  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  61 gacatttaaaaattacaaaccttatgtaagaattcaaagata 102  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  61 gacatttaaaaattacaaaccttatgtaagaattcaaagata 102  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  61 gacatttaaaaattacaaaccttatgtaagaattcaaagata 102  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 2034572 - 2034496
Alignment:
Q  184 tgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttcctataagcgattttcataagct 259  Q
    |||||||||||||||| |||||| | ||| |||||||| |||||| |||  |||| |||||||  ||||||||||||    
T  2034572 tgcttatgtataagctgtttttacaacaaagataaaataaagtcaaactactttcatataagcttttttcataagct 2034496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 420 - 574
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  420 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 519  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  520 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 574  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  171 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 270  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  271 catacggaaataagctgaaaaca 293  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  247 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 312  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 245  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttata 208  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  301 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 352  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctattt 203  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 19113263 - 19113227
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttata 208  Q
    |||||||| |||||||||||||||| |||||||||||    
T  19113263 ttatcatataattgcttatgtataaactatttttata 19113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 146 - 382
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  146 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 242  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  243 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 336  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  337 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 382  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  16 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 102  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 595 - 654
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  595 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 654  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  61 gacatttaaaaattacaaaccttatgtaagaattcaaagata 102  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 537 - 666
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  537 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 636  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  637 gcaattgcaacttcttcatcttcaacttgt 666  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  317 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 382  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 245  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttatagcaa 212  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 354
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  277 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 354  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  184 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 245  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 18962172 - 18962109
Alignment:
Q  184 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 245  Q
    ||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| |||||||    
T  18962172 tgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagc 18962109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  336 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 388  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 354  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  169 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 237  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  173 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 259  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 227  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 354  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  211 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 297  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  248 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 297  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  171 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 245  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 6918955 - 6918991
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttata 208  Q
    |||||||| || |||||||||||||||||||||||||    
T  6918955 ttatcatataagtgcttatgtataagctatttttata 6918991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 8536191 - 8536123
Alignment:
Q  175 tcataaaattgcttatgtataagctatttttatagcaagataaaa-tgaagtcatactgttttcctata 242  Q
    ||||| || |||||||||||||||||||| |||| ||| |||||| |||||||| | ||||||| ||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgttttcatata 8536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 352  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 242  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  171 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 244  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  155 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 237  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 354  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  279 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 375  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 16790502 - 16790466
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttata 208  Q
    |||||||| || |||||||||||||||||||||||||    
T  16790502 ttatcatataagtgcttatgtataagctatttttata 16790466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 51278303 - 51278236
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttatagcaagata--aaatgaagtcatactgttttc 237  Q
    |||||||| ||||||| ||||||||||||||| |||| ||| |||  |||| |||||| |||||||||    
T  51278303 ttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttc 51278236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  239 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 338  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  339 cagtctcacaagtg 352  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 245  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 269  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  270 acatacggaaataagctgaaaaca 293  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  130 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 208  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 7244626 - 7244693
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 237  Q
    |||||||| || |||||||||||||||||||| |||| |  |||||||||  |||||| |||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttc 7244693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 23721417 - 23721461
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttata 208  Q
    ||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  23721417 ataaacacttatcatcaaagtgcttatgtataaactatttctata 23721461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 33894559 - 33894621
Alignment:
Q  184 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 245  Q
    |||||||||||||||||||| |||| |  |||||||||| |||||| ||||||||| |||||||    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagc 33894621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 35536030 - 35536105
Alignment:
Q  171 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataag 244  Q
    ||||||||| ||  ||||||||||||||||||| |||| |  |||||||||| |||||| | ||||||| ||||||    
T  35536030 cttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 276 - 351
Target Start/End: Original strand, 39345508 - 39345581
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 351  Q
    ||||||||||||||| |||||| ||  ||||||||||    ||||||||| |||||| | ||||||||||||||||    
T  39345508 ggaaataagctgaaagcaacttatg--gacatgtcataaactgtttccatgaactctaccaaacagtctcacaagt 39345581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 45078217 - 45078253
Alignment:
Q  172 ttatcataaaattgcttatgtataagctatttttata 208  Q
    |||||||| || |||||||||||||||||||||||||    
T  45078217 ttatcatataagtgcttatgtataagctatttttata 45078253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  174 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 227  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  303 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 354  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 11639568 - 11639512
Alignment:
Q  164 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaat 220  Q
    |||||||||||||||  || | ||||||| ||||||||||||||  |||||||||||    
T  11639568 ataaacacttatcatgtaagtccttatgtgtaagctatttttatgacaagataaaat 11639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 28837075 - 28837002
Alignment:
Q  279 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 354  Q
    ||||||||||||||| ||| ||||  ||||||||| | |||||   |||| ||||| |||||||||||||||||||    
T  28837075 aataagctgaaaacagcttatgtg--catgtcattagctgttttggttaagtcttctaaacagtctcacaagtgct 28837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  248 ttttcataagcttttctagacaacatacggaaataagctgaaaac 292  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 44422642 - 44422698
Alignment:
Q  189 atgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 245  Q
    |||||||||||||||||||| || |||||||| |  ||| ||||||||| |||||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagc 44422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 50764521 - 50764489
Alignment:
Q  171 cttatcataaaattgcttatgtataagctattt 203  Q
    ||||||||| |||||||||||||||||||||||    
T  50764521 cttatcatacaattgcttatgtataagctattt 50764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  186 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 259  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  173 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 227  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  170 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 237  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  187 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 257  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 9843285 - 9843212
Alignment:
Q  277 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 352  Q
    |||||||||||||||||||  || |||| |||| ||| ||||||| | | | ||||| ||||||||||||||||||    
T  9843285 gaaataagctgaaaacaac--ttatggatatgtgattagttgttttcttaatctctttgaaacagtctcacaagtg 9843212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 276 - 351
Target Start/End: Complemental strand, 10650 - 10577
Alignment:
Q  276 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 351  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||| | || |   ||||||||||||||||    
T  10650 ggaaataagctgaaaacaac--ttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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