View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_32 (Length: 251)
Name: NF6547_low_32
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32547581 - 32547354
Alignment:
| Q |
1 |
tgtatccttatatctaatctaaccccgtttaaagcatgtattagtgatgggttaaaccccaaacacaaggtaagagtaggatgtagtcaaagaaatgtct |
100 |
Q |
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| T |
32547581 |
tgtatccttatatctaatctaaccccgtttaaagcatgtattagtgatgggttaaaccccaaacacaag-taagagtaggatgtagtcaaagaaatgtct |
32547483 |
T |
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| Q |
101 |
attaattagtacaacataatataaaccaaataatacaaaagaagacaatacgagaatcaaaaggacaaacatcatcaaactatgacaaccttattttacc |
200 |
Q |
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| T |
32547482 |
attaattagtacaacataatataaaccaaataatacaaaagaagacaatacgagaatcaaaaggacaaacatcatcaaactatggcaaccttattttacc |
32547383 |
T |
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| Q |
201 |
atcttattctaaattttattcatattaat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32547382 |
atcttattctaaattttattcatattaat |
32547354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 32647821 - 32647905
Alignment:
| Q |
142 |
aagacaatacgagaatcaaaaggacaaacatcatcaaactatgacaaccttattttaccatcttattctaaattttattcatattaat |
229 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32647821 |
aagacaatacgagaatcaaaaggacaaacatc---aaactatggcagccttattttaccatcttattctaaattttgttcatattaat |
32647905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32647671 - 32647757
Alignment:
| Q |
1 |
tgtatccttatatctaatctaaccccgtttaaagcatgtattagtgatgggttaaaccccaaacacaaggtaagagtaggatgtagt |
87 |
Q |
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||||||| ||||||||||||||||||| ||||| |||||||||||||| || | ||||||||||||||||||||||| ||||||||| |
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| T |
32647671 |
tgtatccctatatctaatctaaccccgattaaaacatgtattagtgattggctgaaccccaaacacaaggtaagagtgggatgtagt |
32647757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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