View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_34 (Length: 249)
Name: NF6547_low_34
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 52069896 - 52069667
Alignment:
| Q |
13 |
aatatctcaggtgtatggtaataatagtagaataagttaaacaaacaaaatacatgttccctttgtaaaattgagaagtttgacttgttgccttcaaaat |
112 |
Q |
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| T |
52069896 |
aatatctcaggtgtatgttaataatagtagaataagttaaacaaacaaaagacatgttccctttgtaaaatttagaagtttgacttgttgccttcaaaat |
52069797 |
T |
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| Q |
113 |
ctaatacagacaaacctaccccccacaatttacttttaaatgccaattatctaccacatcttcccaaatgttataataccttagagttcactaccttcac |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52069796 |
ctaatacagacaaacctaccccccacaattcacttttaaatgccaattatctaccacatcttcccaaatgtaataataccttagagttcactaccttcac |
52069697 |
T |
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| Q |
213 |
aaaaataggaaccaaatctttagtagtaag |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52069696 |
aaaaataggaaccaaatctttagtagtaag |
52069667 |
T |
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