View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_36 (Length: 241)
Name: NF6547_low_36
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18013279 - 18013358
Alignment:
| Q |
1 |
attttctcattgtaaatctacagagaaaaataataaattctcagaacatttgagatcaaagaattgcttagtcgattagg |
80 |
Q |
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| T |
18013279 |
attttctcattgtaaatgtgcagagaaaaataataaattctcagaacatttgagatcaaagaattgcttagtcgattagg |
18013358 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 18013416 - 18013498
Alignment:
| Q |
138 |
ctatatcatcaacatacataagaatctctgtatcatatgcattaacatatctgttaaatttgtgttagcaacttagatatcta |
220 |
Q |
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| T |
18013416 |
ctatatcatcaacatacataagaatctctgtatcatatgcattaacatatctgttcaatttttgttagcaagttagatatcta |
18013498 |
T |
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