View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_37 (Length: 239)
Name: NF6547_low_37
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_37 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 40822920 - 40823144
Alignment:
| Q |
18 |
ttaagaaagtaaacaaggataagaaagacattacaggccaagttcatatttgaagttatcaacttccaacagctcagcttccctaaggaaggtttcccca |
117 |
Q |
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| T |
40822920 |
ttaagaaagtaaacaaggataagaaagacattacaggccaagttcatatttgaagttatcaacttccaacagctctgcctccctaaggaaggtttcccca |
40823019 |
T |
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| Q |
118 |
ctaaggagaatgaattttagtcgcgttcggggtatttgaaa---tcgcacacatctcaaaaattaatttctagcattggcctcatctccattgctttcta |
214 |
Q |
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| T |
40823020 |
ctaaggagaatgaattttagtcgcgttcggggtatttgaaatcctcgcacacatctcaaaaattaatttctagcattggcctcatctccattgctttcta |
40823119 |
T |
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| Q |
215 |
taactattcttagagcttctagttt |
239 |
Q |
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| T |
40823120 |
taactattcttagagctcctagttt |
40823144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 16020735 - 16020767
Alignment:
| Q |
18 |
ttaagaaagtaaacaaggataagaaagacatta |
50 |
Q |
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| T |
16020735 |
ttaagaaagtaaacaaggttaagaaagacatta |
16020767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 20290223 - 20290000
Alignment:
| Q |
18 |
ttaagaaagtaaacaaggataagaaagacattacaggccaagttcatatttgaagttatcaacttccaacagctcagcttccctaaggaaggtttcccca |
117 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| | |
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| T |
20290223 |
ttaagaaagtaaacaatgttaagaaagacattacaggccaagttcatatttgaagttatcaacctccaacagctctgcctccctaaggaaggtttccc-a |
20290125 |
T |
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| Q |
118 |
ctaaggagaatgaattttagtcgcgttcggggtatttgaaatc---gcacacatctcaaaaattaatttctagcattggcctcatctccattgctttcta |
214 |
Q |
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|| || ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20290124 |
ctcagaagaatgaattttagtcgcgttgggggtatttgaaatcctcgtgcacatctcaaaaattaatttctagcattggcctcatctccatcgctttcta |
20290025 |
T |
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| Q |
215 |
taactattcttagagcttctagttt |
239 |
Q |
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| T |
20290024 |
taactattcttagagctcctagttt |
20290000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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