View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6547_low_38 (Length: 228)
Name: NF6547_low_38
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5317197 - 5317409
Alignment:
| Q |
1 |
tttcatgcacgaagagccttctaattactactttccacaacatgcaagataagatgctataagttatccaaacacagcatnnnnnnntgaa--gagatat |
98 |
Q |
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| T |
5317197 |
tttcatgcacgaagagccttctaattactactttccacaacatgcaagataagatgctataagttatccaaacacaacataaaaaaaaaaaaagagatgt |
5317296 |
T |
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| Q |
99 |
tggatccccctaacgaatactgataaatatttggcagggtcctaaaactatcaaagtaataatattaaattcgtttctatgatgactattgttaatttct |
198 |
Q |
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| T |
5317297 |
tggatccccctaacgaatactgataaatatttggcagggtcctaaaattatcaaagtaataatattaaattcgtttctatgatgactattgttaatttct |
5317396 |
T |
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| Q |
199 |
acttagtagtttc |
211 |
Q |
| |
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||||||||||||| |
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| T |
5317397 |
acttagtagtttc |
5317409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 46542665 - 46542603
Alignment:
| Q |
142 |
aaaactatcaaagtaataatattaaattcgtttctatgatgactattgttaatttctacttag |
204 |
Q |
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|||| |||||||||||||| ||||||||||| |||| || |||| || |||||||||| |||| |
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| T |
46542665 |
aaaattatcaaagtaataaaattaaattcgtatctacgaggactgttattaatttctatttag |
46542603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 24384949 - 24385011
Alignment:
| Q |
142 |
aaaactatcaaagtaataatattaaattcgtttctatgatgactattgttaatttctacttag |
204 |
Q |
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| T |
24384949 |
aaaactatcgaagtaataaaattaaattcgtattcacgatgactgttattaatttctacttag |
24385011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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