View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6547_low_41 (Length: 204)

Name: NF6547_low_41
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6547_low_41
NF6547_low_41
[»] chr4 (3 HSPs)
chr4 (13-204)||(18459782-18459972)
chr4 (147-204)||(7452419-7452475)
chr4 (145-181)||(5362059-5362095)
[»] chr7 (3 HSPs)
chr7 (36-99)||(43243411-43243474)
chr7 (148-200)||(22687742-22687793)
chr7 (147-187)||(24725567-24725607)
[»] chr5 (2 HSPs)
chr5 (148-200)||(20923718-20923769)
chr5 (147-184)||(22645812-22645849)
[»] scaffold0042 (1 HSPs)
scaffold0042 (145-184)||(93797-93836)
[»] chr8 (2 HSPs)
chr8 (37-112)||(41299403-41299478)
chr8 (147-184)||(5922048-5922085)
[»] chr2 (3 HSPs)
chr2 (143-200)||(23863399-23863455)
chr2 (52-117)||(40594065-40594130)
chr2 (146-186)||(20063712-20063752)
[»] chr1 (2 HSPs)
chr1 (147-184)||(9352156-9352193)
chr1 (148-184)||(30619075-30619111)
[»] chr6 (2 HSPs)
chr6 (146-186)||(11327662-11327702)
chr6 (148-184)||(17250057-17250093)
[»] chr3 (1 HSPs)
chr3 (147-187)||(25870466-25870506)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 18459972 - 18459782
Alignment:
Q  13 attattctcctcttgctccttggtttcttccaagtacatttcttcaaccattggcttccacagccgaactctggcgtttataaaccagttagatacctgc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18459972 attattctcctcttgctccttggtttcttccaagtacatttcttcaaccattggcttccacagccgaactctggcgtttataaaccagttagatacctgc 18459873  T
Q  113 attaaaaacttaaaagtgtcaaacactttctatacattgttgtaaaaatcccgactaaaatcctaaaatccaagaatattgcgactttattc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  18459872 attaaaaacttaaaagtgtcaaacactttctatacattgttgtaaaaatcccgactaaaatcctaaaatccaag-attttgcgactgtattc 18459782  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 7452419 - 7452475
Alignment:
Q  147 cattgttgtaaaaatcccgactaaaatcctaaaatccaagaatattgcgactttattc 204  Q
    ||||||||| |||||||||||| |||| ||||||||| ||||| |||| |||||||||    
T  7452419 cattgttgtgaaaatcccgacttaaattctaaaatcc-agaattttgcaactttattc 7452475  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 5362095 - 5362059
Alignment:
Q  145 tacattgttgtaaaaatcccgactaaaatcctaaaat 181  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  5362095 tacattgttgtcaaaatcccgacttaaatcctaaaat 5362059  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 43243474 - 43243411
Alignment:
Q  36 tttcttccaagtacatttcttcaaccattggcttccacagccgaactctggcgtttataaacca 99  Q
    ||||||| | |||||||||||| |||||||||||||| |||| |||||| || |||||||||||    
T  43243474 tttcttctacgtacatttcttccaccattggcttccaaagcctaactctagcatttataaacca 43243411  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 22687793 - 22687742
Alignment:
Q  148 attgttgtaaaaatcccgactaaaatcctaaaatccaagaatattgcgacttt 200  Q
    |||||||| |||||||||||| |||||||||||| || |||| ||||||||||    
T  22687793 attgttgtcaaaatcccgacttaaatcctaaaattcaggaat-ttgcgacttt 22687742  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 24725607 - 24725567
Alignment:
Q  147 cattgttgtaaaaatcccgactaaaatcctaaaatccaaga 187  Q
    ||||||||| ||||||| |||| ||||||||||||||||||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaatccaaga 24725567  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 20923718 - 20923769
Alignment:
Q  148 attgttgtaaaaatcccgactaaaatcctaaaatccaagaatattgcgacttt 200  Q
    |||||||| |||||||||||| |||||||||||||| ||||| ||||||||||    
T  20923718 attgttgtcaaaatcccgacttaaatcctaaaatcc-agaattttgcgacttt 20923769  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 22645849 - 22645812
Alignment:
Q  147 cattgttgtaaaaatcccgactaaaatcctaaaatcca 184  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatcca 22645812  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 93836 - 93797
Alignment:
Q  145 tacattgttgtaaaaatcccgactaaaatcctaaaatcca 184  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  93836 tacattgttgtcaaaatcccgacttaaatcctaaaatcca 93797  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 41299478 - 41299403
Alignment:
Q  37 ttcttccaagtacatttcttcaaccattggcttccacagccgaactctggcgtttataaaccagttagatacctgc 112  Q
    ||||||||| ||||||||||| |||||||||||||| || |  ||||| || || |||||||| || |||||||||    
T  41299478 ttcttccaaatacatttcttccaccattggcttccatagtctcactcttgcattaataaaccaatttgatacctgc 41299403  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 5922048 - 5922085
Alignment:
Q  147 cattgttgtaaaaatcccgactaaaatcctaaaatcca 184  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatcca 5922085  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 23863455 - 23863399
Alignment:
Q  143 tatacattgttgtaaaaatcccgactaaaatcctaaaatccaagaatattgcgacttt 200  Q
    ||||||||||||| |||||||||||| |||| ||||||| | ||||| ||||||||||    
T  23863455 tatacattgttgtcaaaatcccgacttaaattctaaaat-cgagaattttgcgacttt 23863399  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 40594065 - 40594130
Alignment:
Q  52 ttcttcaaccattggcttccacagccgaactctggcgtttataaaccagttagatacctgcattaa 117  Q
    |||||||||||| ||||||||||  |||||||  || || |||||||| || ||||||||||||||    
T  40594065 ttcttcaaccataggcttccacacgcgaactcgagcattaataaaccaatttgatacctgcattaa 40594130  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 20063712 - 20063752
Alignment:
Q  146 acattgttgtaaaaatcccgactaaaatcctaaaatccaag 186  Q
    |||||||||| |||||||||||| ||| |||||||||||||    
T  20063712 acattgttgtcaaaatcccgacttaaaacctaaaatccaag 20063752  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 9352193 - 9352156
Alignment:
Q  147 cattgttgtaaaaatcccgactaaaatcctaaaatcca 184  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaatcca 9352156  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 30619075 - 30619111
Alignment:
Q  148 attgttgtaaaaatcccgactaaaatcctaaaatcca 184  Q
    |||||||| |||||||||||| |||||||||||||||    
T  30619075 attgttgtcaaaatcccgacttaaatcctaaaatcca 30619111  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 11327702 - 11327662
Alignment:
Q  146 acattgttgtaaaaatcccgactaaaatcctaaaatccaag 186  Q
    |||||||||| |||||||||||| ||| |||||||||||||    
T  11327702 acattgttgtcaaaatcccgacttaaaacctaaaatccaag 11327662  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 17250057 - 17250093
Alignment:
Q  148 attgttgtaaaaatcccgactaaaatcctaaaatcca 184  Q
    |||||||| |||||||||||| |||||||||||||||    
T  17250057 attgttgttaaaatcccgacttaaatcctaaaatcca 17250093  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 25870506 - 25870466
Alignment:
Q  147 cattgttgtaaaaatcccgactaaaatcctaaaatccaaga 187  Q
    ||||||||| |||||| ||||| ||||||||||||||||||    
T  25870506 cattgttgtcaaaatctcgacttaaatcctaaaatccaaga 25870466  T

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