View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6547_low_6 (Length: 601)
Name: NF6547_low_6
Description: NF6547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6547_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 24 - 591
Target Start/End: Complemental strand, 51302537 - 51301970
Alignment:
| Q |
24 |
atcagcatactgtcacgttttttcactggtaagaccaaccattctgtcatggtttttcatggtatcctttgttgaagtctgtaatgtctatgtaaggcat |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302537 |
atcagcatactgtcacgttttttcactggtaagaccaaccattctgtcatggtttttcatggtatcctttgttgaagtctgtaatgtctatgtaaggcat |
51302438 |
T |
|
| Q |
124 |
gtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttttaaagtggagaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51302437 |
gtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttttaaagtggagaat |
51302338 |
T |
|
| Q |
224 |
ttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggc-tttctttggttgtatgagtttggtgcgaaggagttaggtgcattttt |
322 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51302337 |
ttcttgctgtttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgtatgagtttgttgcgaaggagttaggtgcattttt |
51302238 |
T |
|
| Q |
323 |
agcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttatctgttctgtgtccagcttgc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302237 |
agcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttatctgttctgtgtccagcttgc |
51302138 |
T |
|
| Q |
423 |
ctctttgttccatcctagcacatctcatgcttgagtgtggttttaatataagtataagttgctctatgacgcttttgttannnnnnnnnnnnnataccta |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| | |
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| T |
51302137 |
ctctttgttccatcctagcacatctcatgcttgagtttggttttaatacaagtataagttgctctatgacgcttttgtta-tttttcttttttataccaa |
51302039 |
T |
|
| Q |
523 |
atgactgcgttttgtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatgt |
591 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51302038 |
atgactgcgtttggtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatgt |
51301970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 24 - 425
Target Start/End: Complemental strand, 44113613 - 44113227
Alignment:
| Q |
24 |
atcagcatactgtcacgttttttcactggtaagaccaaccattctgtcatggtttttcatggtatcctttgttgaagtctgtaatgtctatgt-----aa |
118 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||| ||||||||||||| || || |
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|
| T |
44113613 |
atcagcatactgtcacggtttttcaccggtaagaccagc-attctgtctttgtttttcatggtatcctttgttgaaatctgtaatgtctaggttatgcaa |
44113515 |
T |
|
| Q |
119 |
ggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttttaaagtgg |
218 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||||||| |
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|
| T |
44113514 |
ggcatgtccttgctttgtaaggtattcatatctaggtggaagctgtgatgagtttttatttttgaa----------gcttgaaatagagtttgaaagtgg |
44113425 |
T |
|
| Q |
219 |
agaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggc-tttctttggttgtatgagtttggtgcgaaggagttaggtgca |
317 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || |
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|
| T |
44113424 |
agaatttcttactatttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgtatgagttaggtgcgaaggagttaggtaca |
44113325 |
T |
|
| Q |
318 |
tttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttatctgttctgtgtccag |
417 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
44113324 |
tttttagcctgttcaagtattgc------ttgtgtgctactgctggaaattttgcttg---tggggatttgttcttgg-ttttgtctgttctgtgtccag |
44113235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 591
Target Start/End: Complemental strand, 44113124 - 44113049
Alignment:
| Q |
517 |
tacctaatgactgcgttttgtattaattcctcgtttggttgt-aaaattatgatattttatcaagtttgatgatgt |
591 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
44113124 |
taccaaatgactgcttttagtattaattcctcatttggttgtaaaaattatgatattttatcaagtttaatgatgt |
44113049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 50016468 - 50016238
Alignment:
| Q |
24 |
atcagcatactgtcacgttttttcactggtaagaccaaccattctgtcatggtttttcatggtatcctttgttgaagtctgtaatgtcta-----tgtaa |
118 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||| ||||||||||||| || || |
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|
| T |
50016468 |
atcagcatactgtcacggtttttcaccggtaagaccagc-attctgtctttgtttttcatggtatcctttgttgaaatctgtaatgtctaggttttgcaa |
50016370 |
T |
|
| Q |
119 |
ggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttttaaagtgg |
218 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||||||| |
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|
| T |
50016369 |
ggcatgtccttgctttgtaaggtattcatatctaggtggaagctgtgatgagtttttattt----------ttgaagcttgaaattgagtttgaaagtgg |
50016280 |
T |
|
| Q |
219 |
agaatttctcgctgtttcaagttttggtgaagtctgttagtt |
260 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
50016279 |
agaatttcttactatttcaagttttggtgaagtctgttagtt |
50016238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 18843430 - 18843337
Alignment:
| Q |
117 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttt |
210 |
Q |
| |
|
||||||||| |||||||| || |||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18843430 |
aaggcatgtacttgctttctaaggtatccatatctaggtgaaagctgtgatgattttttatttttgaatagtcttgaagcttgaaatcaagttt |
18843337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 18854898 - 18854805
Alignment:
| Q |
117 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttt |
210 |
Q |
| |
|
||||||||| |||||||| || |||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18854898 |
aaggcatgtacttgctttctaaggtatccatatctaggtgaaagctgtgatgattttttatttttgaatagtcttgaagcttgaaatcaagttt |
18854805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 591
Target Start/End: Complemental strand, 50016047 - 50015992
Alignment:
| Q |
536 |
gtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatgt |
591 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50016047 |
gtattaattcctcatttggttgtaaaattatgatattttatcaagtttaatgatgt |
50015992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 18843221 - 18843167
Alignment:
| Q |
536 |
gtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatg |
590 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
18843221 |
gtattaattccttgtctggttgtaaaattatgatattttatgaagtttaatgatg |
18843167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 18854689 - 18854635
Alignment:
| Q |
536 |
gtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatg |
590 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
18854689 |
gtattaattccttgtctggttgtaaaattatgatattttatgaagtttaatgatg |
18854635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 18854956 - 18854896
Alignment:
| Q |
41 |
ttttttcactggtaagaccaaccattctgtcatggtttttca--tggtatcctttgttgaag |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
18854956 |
ttttttcactggtaagaccagc-attctgtcatggtttttcatgtggtatcttttgttgaag |
18854896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 18843488 - 18843446
Alignment:
| Q |
41 |
ttttttcactggtaagaccaaccattctgtcatggtttttcatg |
84 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
18843488 |
ttttttcactggtaagaccagc-attctgtcatggtttttcatg |
18843446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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