View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_13 (Length: 341)
Name: NF6548_high_13
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 38720892 - 38721199
Alignment:
| Q |
20 |
atggaaatggactttcagctgtcatgatagctgccgcagagggtaacgtggaagctttcaaggtacttcttcatgctggagctgatgtaatcaatcttaa |
119 |
Q |
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| T |
38720892 |
atggaaatggactttcagctgtcatgatagctgccgcagagggtaacgtggaagctttcaaggtacttcttcatgctggagctgatgtaatcaatcttaa |
38720991 |
T |
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| Q |
120 |
aaacagatatggtttgacagctctaaatctcatagacttgaaccaaaatggtgaaaataaggaaaattttcacaaggtgatgtttgaatatgcacttaaa |
219 |
Q |
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| T |
38720992 |
aaacagatatggtttgacagctctaaatctcatagacttgaaccaaaatggtgaaaataaggaaaattttcacaaggtgatgtttgaatatgcacttaaa |
38721091 |
T |
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| Q |
220 |
aagggatgtctgaatattagtactttaaccgagccaaatcctcttcaccgtgcagcttgttatggagacat-agcattgttgaaaaattattaaaagagg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38721092 |
aagggatgtctgaatattagtactttaaccgagccaaatcctcttcaccgtgcagcttgttatggagacataagcattgttgaaaaattattaaaagagg |
38721191 |
T |
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| Q |
319 |
gctactat |
326 |
Q |
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|||||||| |
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| T |
38721192 |
gctactat |
38721199 |
T |
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