View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_2 (Length: 637)
Name: NF6548_high_2
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 13 - 617
Target Start/End: Original strand, 3151251 - 3151854
Alignment:
| Q |
13 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaaactccacggaattttatttccagcagatgaaactgaacattgatgatacac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
3151251 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaa-ctccacggaaatttatttccagcagatgaaactaaacattgatgacacac |
3151349 |
T |
|
| Q |
113 |
caatggagtacttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcactatgaggaatcaaaaatgctattgtggtggaat |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
3151350 |
caattgagtacttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcactatgaggaatcaaaaatgttattgtggtagagt |
3151449 |
T |
|
| Q |
213 |
actggacaaagatgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcct |
312 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3151450 |
actggacaaagatgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcct |
3151549 |
T |
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| Q |
313 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3151550 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
3151649 |
T |
|
| Q |
413 |
gtttttctatcttctatataatctgtgattttgnnnnnnnnccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatc |
512 |
Q |
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| T |
3151650 |
gtttttctatcttctatataatctgtgattttgttttttttccttgtcatttgatgtttcatctcttgcttttgtaggtagttgatcttctcaaattatc |
3151749 |
T |
|
| Q |
513 |
attgttctcaaactcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatgg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3151750 |
attgttctcaaactcccctttgacagatttaatcttaaagaagaatcaatttgttgataaattttaccaaagcaatcaaaaaatttgaatttggaaatgg |
3151849 |
T |
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| Q |
613 |
agaga |
617 |
Q |
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||||| |
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| T |
3151850 |
agaga |
3151854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
268 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
350 |
Q |
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| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 350
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
240 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
339 |
Q |
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|||||| ||||||| || |||||| | ||||||||| | ||||| ||||| ||||||| || |||||||||||||||||| | |||||| |||| ||| |
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| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
|
| Q |
340 |
catcagaagct |
350 |
Q |
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| ||| ||||| |
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| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
240 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
339 |
Q |
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||||||| ||||||||||||||| | | ||||| || || ||||| ||||| || |||| | |||||||||||||||||| | ||||||| ||| ||| |
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| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
|
| Q |
340 |
catcagaagcttg |
352 |
Q |
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| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 24232036 - 24231981
Alignment:
| Q |
487 |
taggtagttgatcttctcaaattatcattgttctcaaactcccctttgacagattt |
542 |
Q |
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| T |
24232036 |
taggtagttgatcttctcaagttatcattaatctcaaagacccctttgaccgattt |
24231981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 418
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
268 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
367 |
Q |
| |
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|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
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| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
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| Q |
368 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
418 |
Q |
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| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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