View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_20 (Length: 311)
Name: NF6548_high_20
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 24225001 - 24224691
Alignment:
| Q |
1 |
cgtgaatctaaaaatccaaagaaataataccaattagtggaatgttgcaaattaccatttcgaagcaaacatcacgttcccagtttctctaatttgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
24225001 |
cgtgaatctaaaaatccaaagaaataataccaattagtggaatgttgcaaattaccatttcgaagcaaacatcatgttcccaatttctctaatttgtttc |
24224902 |
T |
|
| Q |
101 |
taccaagcaattgacggaaggaaccatgctttttcttcaatcataaannnnnnnnccgaacaaatgaccaacattaaaaattaaaccaaatcaatcacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24224901 |
taccaagcaattgacggaaggaaccatgctttttcttcaatcataaattttttttccgaataaatgaccaacattaaaaattaaaccaaatcaatcacac |
24224802 |
T |
|
| Q |
201 |
aacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggataccatgttaacaatatagataata |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
24224801 |
aacattccttaaacttttgggaactcaatagcgaaagcgataaacaattcaatgaggattagatcatgctttgaataccatgttaacaatatagataata |
24224702 |
T |
|
| Q |
301 |
agataaaataa |
311 |
Q |
| |
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||||||||||| |
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| T |
24224701 |
agataaaataa |
24224691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 17927761 - 17927870
Alignment:
| Q |
178 |
aaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggata |
277 |
Q |
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| T |
17927761 |
aaattaaaccaaatcaatcacacaacattccc-aaacttttgaaaactcaatagcggaagctacaaacaatttaaagacgatcaaaccatgctctgtata |
17927859 |
T |
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| Q |
278 |
ccatgttaaca |
288 |
Q |
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| T |
17927860 |
ccatgttaaca |
17927870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 10740855 - 10740746
Alignment:
| Q |
179 |
aattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggatac |
278 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | | | |||||| |||||| ||| |||||| | ||||| |
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| T |
10740855 |
aattaaaccaaatcaatcacacaacattcc-caaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgatac |
10740757 |
T |
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| Q |
279 |
catgttaacaa |
289 |
Q |
| |
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| T |
10740756 |
catgttaacaa |
10740746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 13166727 - 13166651
Alignment:
| Q |
161 |
caaatgaccaacattaaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagc |
238 |
Q |
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|||| |||||||| || ||||||||||||||||||||||||| ||||| ||| |||||||||| ||| ||||||||| |
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| T |
13166727 |
caaaagaccaacactataaattaaaccaaatcaatcacacaaaattcc-caaatttttgggaacacaaaagcggaagc |
13166651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 9401883 - 9401768
Alignment:
| Q |
175 |
taaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttgg |
274 |
Q |
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||||||| |||||||||||||||||||| ||||| ||| |||||||||||||| | |||||| | ||| | ||||| |||||| | | || | | | | |
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| T |
9401883 |
taaaaatcaaaccaaatcaatcacacaatattcc-caaatttttgggaactcaacaacggaagagacaaatagttcaaggaggatcagaacaagttctcg |
9401785 |
T |
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| Q |
275 |
ataccatgttaacaata |
291 |
Q |
| |
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||||||||||||||||| |
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| T |
9401784 |
ataccatgttaacaata |
9401768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 3950652 - 3950609
Alignment:
| Q |
256 |
ggattaaatcatgctttggataccatgttaacaatatagataat |
299 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||||| |
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| T |
3950652 |
ggatcaaaccatgctttcgataccatgttaacaatatagataat |
3950609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 24725881 - 24725785
Alignment:
| Q |
215 |
ttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggataccatgttaacaatatagataataagataaaataa |
311 |
Q |
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||||||||| ||||||| ||||| ||||| |||||| || ||| |||| | ||| | |||| ||||||||||| ||||||||| ||||| ||||| |
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| T |
24725881 |
ttttgggaattcaatagaggaagttataaatgattcaaggacgatcaaattaggctcttgatatcatgttaacaacatagataatcagatagaataa |
24725785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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