View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_23 (Length: 279)
Name: NF6548_high_23
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_23 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 11585966 - 11585698
Alignment:
| Q |
1 |
tggctttgactgagctttgctatcttgttttatcaattggagggattggaggtacgtaataaaaatctaatgtacgagttaaattttaaagagaatctga |
100 |
Q |
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| T |
11585966 |
tggctttgactgagcattgctatcttgttttatcaattggagggatttcaggtacgtaataaaaatctaatgtacaagttaaattttaaagagaatctga |
11585867 |
T |
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| Q |
101 |
tgatattttattcaatatttatatttttctaggagctgtcagaggtgttttgggtattagttaggttggaaaatttttcagtggaatttcctttcaatgc |
200 |
Q |
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| T |
11585866 |
tgataatttattcaatatttctatttttctagaag----------tgttttgggtattagtgaggatggaaaatttttcagtggaatttcctttcaatgc |
11585777 |
T |
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| Q |
201 |
tcaagtccttttaatattggaaacaaaattaaggtaaattaatttagtattagatgtaagggttttatgtaaggatttt |
279 |
Q |
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| T |
11585776 |
tcaagtccttttgatattggaaacaaaattaaggtaaattaatttagtactagatgtaagggttttatgtaaggatttt |
11585698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 45 - 279
Target Start/End: Complemental strand, 11589338 - 11589104
Alignment:
| Q |
45 |
attggaggtacgtaataaaaatctaatgtacgagttaaattttaaagagaatctgatgatattttattcaatatttatatttttctaggagctgtcagag |
144 |
Q |
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| T |
11589338 |
attggaggtacgtaataaaaatctaatgtgcgagttaaattttaaagagaatttgattataatttattcaatatttctatttttctatgaactgtcagtg |
11589239 |
T |
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| Q |
145 |
gtgttttgggtattagttaggttggaaaatttttcagtggaatttcctttcaatgctcaagtccttttaatattggaaacaaaattaaggtaaattaatt |
244 |
Q |
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| T |
11589238 |
gtgctttgggtattagtgaggttggaaattttttcagtggaatttcctttcaatgctcaagtccttttgaaattgaaaacaaaattaaggtaaattaatt |
11589139 |
T |
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| Q |
245 |
tagtattagatgtaagggttttatgtaaggatttt |
279 |
Q |
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| T |
11589138 |
tagtactagatgtatgggttttatgtaaggatttt |
11589104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 11919787 - 11919712
Alignment:
| Q |
28 |
ttttatcaattggagggattggaggtacgtaataaaaatctaatgtacgagttaaattttaaagagaatctgatgata |
105 |
Q |
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| T |
11919787 |
ttttctcaattggagcgattggaggtacgtaataaaaatctaatatacg-gttaaatgttaga-agaatatgatgata |
11919712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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