View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6548_high_30 (Length: 252)
Name: NF6548_high_30
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_30 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 18103413 - 18103345
Alignment:
| Q |
182 |
gagagagtatgatatgttaggtaaaagaaaacatcaaatactcaaaaaagaatcatcatttgttttaaact |
252 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18103413 |
gagagagtatgatttgttaggtaaaagaaaacatcaaatactc--aaaagaatcatcatttgttttaaact |
18103345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 12853886 - 12853833
Alignment:
| Q |
64 |
acattaaagactttttacagcaaatgcatttggcttcaaatcactattttaaca |
117 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| |||||||| |||||| |
|
|
| T |
12853886 |
acattaaagactttttacagcatatacatttggcttcagatcactatattaaca |
12853833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University