View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6548_high_4 (Length: 482)

Name: NF6548_high_4
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6548_high_4
NF6548_high_4
[»] chr4 (6 HSPs)
chr4 (178-367)||(54901456-54901645)
chr4 (174-367)||(30561658-30561852)
chr4 (363-465)||(30561878-30561980)
chr4 (363-465)||(54901671-54901773)
chr4 (114-181)||(44573105-44573172)
chr4 (1-35)||(44573285-44573319)
[»] chr2 (2 HSPs)
chr2 (182-367)||(28823505-28823690)
chr2 (363-465)||(28823716-28823818)
[»] chr8 (2 HSPs)
chr8 (181-367)||(9332827-9333014)
chr8 (363-465)||(9333040-9333142)
[»] chr5 (3 HSPs)
chr5 (363-465)||(540013-540115)
chr5 (210-321)||(539805-539908)
chr5 (316-367)||(539936-539987)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 178 - 367
Target Start/End: Original strand, 54901456 - 54901645
Alignment:
Q  178 ttaaggtggcccctaatatggtcccnnnnnnnaaaggtccaaccatcgacctcataaaatgaccggttatagcaggttcccatagcttcttccagttaaa 277  Q
    ||||||||||||||| |||||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901456 ttaaggtggcccctagtatggtccctttttttaaaggtccaaccatggacctcataaaatgaccggttatagcaggttcccatagcttcttccagttaaa 54901555  T
Q  278 aacattacccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54901556 aacattacccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 54901645  T

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Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 30561658 - 30561852
Alignment:
Q  174 atgtttaaggtggcccctaatatggtcccnnnnnnnaaaggtccaaccatcgacctcataaaatgaccggttatagcaggttcccatagcttcttccagt 273  Q
    ||||||| ||||||||||| |||||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30561658 atgtttatggtggcccctagtatggtccctttttttaaaggtccaaccatggacctcataaaatgaccggttatagcaggttcccatagcttcttccagt 30561757  T
Q  274 taaaaacatt-acccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 367  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30561758 taaaaacatttacccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 30561852  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 30561878 - 30561980
Alignment:
Q  363 ttaagaacaaagtttatgagnnnnnnngttgttgttggatttgaagtttatgatcttttgagtcaagtttgaataacaactcacacattaagttacaact 462  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30561878 ttaagaacaaagtttatgagtttttttgttgttgttggatttgaagtttatgagcttttgagtcaagtttgaataacaactcacacattaagttacaact 30561977  T
Q  463 tct 465  Q
    |||    
T  30561978 tct 30561980  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 54901671 - 54901773
Alignment:
Q  363 ttaagaacaaagtttatgagnnnnnnngttgttgttggatttgaagtttatgatcttttgagtcaagtttgaataacaactcacacattaagttacaact 462  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54901671 ttaagaacaaagtttatgagtttttttgttgttgttggatttgaagtttatgagcttttgagtcaagtttgaataacaactcacacattaagttacaact 54901770  T
Q  463 tct 465  Q
    |||    
T  54901771 tct 54901773  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 44573172 - 44573105
Alignment:
Q  114 ggttcttgtcttaagtcaactcattagtattatttgaaattttaaatatttttgatagtcatgtttaa 181  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44573172 ggttcttgtcataagtcaactcattagtattattcaaaattttaaatatttttgatagtcatgtttaa 44573105  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44573319 - 44573285
Alignment:
Q  1 ttaatgtttgaatttcaattgggataaatacatat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  44573319 ttaatgtttgaatttcaattgggataaatacatat 44573285  T

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Target: chr2 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 182 - 367
Target Start/End: Original strand, 28823505 - 28823690
Alignment:
Q  182 ggtggcccctaatatggtcccnnnnnnnaaaggtccaaccatcgacctcataaaatgaccggttatagcaggttcccatagcttcttccagttaaaaaca 281  Q
    ||||||||||| |||||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28823505 ggtggcccctagtatggtccctttttttaaaggtccaaccatggacctcataaaatgaccggttatagcaggttcccatagcttcttccagttaaaaaca 28823604  T
Q  282 ttacccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 367  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28823605 ttacccataaaggtgcatcaatatctatgcgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 28823690  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 28823716 - 28823818
Alignment:
Q  363 ttaagaacaaagtttatgagnnnnnnngttgttgttggatttgaagtttatgatcttttgagtcaagtttgaataacaactcacacattaagttacaact 462  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28823716 ttaagaacaaagtttatgagtttttttgttgttgttggatttgaagtttatgagcttttgagtcaagtttgaataacaactcacacattaagttacaact 28823815  T
Q  463 tct 465  Q
    |||    
T  28823816 tct 28823818  T

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Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 181 - 367
Target Start/End: Original strand, 9332827 - 9333014
Alignment:
Q  181 aggtggcccctaatatggtcccnnnnnnnaaaggtccaaccatcgacctcataaaatgaccggttatagcaggttcccatagcttcttccagttaaaaac 280  Q
    |||||||||||| |||||||||       |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9332827 aggtggcccctagtatggtccctttttttaaaggtccaaccatggacctcataaaatgaccggttatagcaggttcccatagcttcttccagttaaaaac 9332926  T
Q  281 att-acccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 367  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9332927 atttacccataaaggtgcatcaatatctatgtgtgggtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 9333014  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 9333040 - 9333142
Alignment:
Q  363 ttaagaacaaagtttatgagnnnnnnngttgttgttggatttgaagtttatgatcttttgagtcaagtttgaataacaactcacacattaagttacaact 462  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9333040 ttaagaacaaagtttatgagtttttttgttgttgttggatttgaagtttatgagcttttgagtcaagtttgaataacaactcacacattaagttacaact 9333139  T
Q  463 tct 465  Q
    |||    
T  9333140 tct 9333142  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 540013 - 540115
Alignment:
Q  363 ttaagaacaaagtttatgagnnnnnnngttgttgttggatttgaagtttatgatcttttgagtcaagtttgaataacaactcacacattaagttacaact 462  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  540013 ttaagaacaaagtttatgagtttttttgttgttgttggatttgaagtttatgagcttttgagtcaagtttgaataacaactcacacattaagttacaact 540112  T
Q  463 tct 465  Q
    |||    
T  540113 tct 540115  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 539805 - 539908
Alignment:
Q  210 aaaggtccaaccatcgacctcataaaatgaccggttatagcaggttccc-atagcttcttccagttaaaaacattacccataaaggtgcatcaatatcta 308  Q
    |||||||||||||| |||||||||||||||||         |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  539805 aaaggtccaaccatggacctcataaaatgacc---------aggttccccatagcttcttccagttaaaaacattacccataaacgtgcaccaatatcta 539895  T
Q  309 tgtgtgggtgaat 321  Q
    |||||||||||||    
T  539896 tgtgtgggtgaat 539908  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 539936 - 539987
Alignment:
Q  316 gtgaatttgaaagacatggaactcccaaatttcactatgcatctaatttaag 367  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  539936 gtgaatttgaaagacatggaactcccaaatttcactatgcctctaatttaag 539987  T

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