View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_5 (Length: 446)
Name: NF6548_high_5
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 36978694 - 36979122
Alignment:
| Q |
8 |
ggacatcatcacagactctacatattgatttcgaattatacgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt |
107 |
Q |
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||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978694 |
ggacaacatcacagactctacatattgattttgaattatgcgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt |
36978793 |
T |
|
| Q |
108 |
taatcctttcttaagaatattatctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttggactgatagatgttg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36978794 |
taatcctttcttaagaatattatctccactcttaacattggaattgaacttattgctaacatccttctgtttcacctcctctttggactgatagatgttc |
36978893 |
T |
|
| Q |
208 |
agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978894 |
agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg |
36978993 |
T |
|
| Q |
308 |
atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978994 |
atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt |
36979093 |
T |
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| Q |
408 |
tcctttagtttctactgtggctgatgatg |
436 |
Q |
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| T |
36979094 |
tcctttagtttctactgtggctgatgatg |
36979122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 36979752 - 36979906
Alignment:
| Q |
210 |
cttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgat |
309 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
36979752 |
cttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaa |
36979851 |
T |
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| Q |
310 |
gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtag |
364 |
Q |
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||||||||| | || ||||| |||| |||||||| | ||| ||||||||| |||| |
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| T |
36979852 |
gttgttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtag |
36979906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 36984396 - 36984462
Alignment:
| Q |
227 |
gcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaa |
293 |
Q |
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| T |
36984396 |
gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaa |
36984462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 262 - 436
Target Start/End: Original strand, 36996413 - 36996587
Alignment:
| Q |
262 |
ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg |
361 |
Q |
| |
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||||||||||||||| | || || ||||||||| | | ||||| | ||||||||| | || ||||| |||| ||||| || ||||| ||||||||| | |
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| T |
36996413 |
ctgtgtttcctcccagtgaggtgcgaattcaagtctttattgcttgtagttgttaccaaacataaagcacaagtccactttttctgcatttccttctgtg |
36996512 |
T |
|
| Q |
362 |
tagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg |
436 |
Q |
| |
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|| || ||| || ||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
36996513 |
tacaatcctttggaaactctccaccagctctgtcactctctgctgttcctttagtttccactgtgactgatgatg |
36996587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 436
Target Start/End: Original strand, 36980522 - 36980712
Alignment:
| Q |
246 |
agcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcc |
345 |
Q |
| |
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|||||||| | || ||||||||||||| |||||||| |||||| ||||| | ||| | ||||||||||||| | || | ||| |||| ||||||| | |
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| T |
36980522 |
agcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctc |
36980621 |
T |
|
| Q |
346 |
tgcagttccttctgcgtagaactcttgagatac-tcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg |
436 |
Q |
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|||| ||||||||| ||||||||| ||| || ||| ||||||| | ||||||| |||||||||||| ||||| |||||| ||||||||| |
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| T |
36980622 |
tgcacttccttctgtgtagaactc-cgaggaacttctccaccagccctttcactctctgctgttcctttggtttccactgtgactgatgatg |
36980712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 37000387 - 37000469
Alignment:
| Q |
235 |
gctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttac |
317 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||| ||| ||| ||||||||||||||| |
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| T |
37000387 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttac |
37000469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 436
Target Start/End: Original strand, 36995772 - 36995883
Alignment:
| Q |
325 |
aaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactg |
424 |
Q |
| |
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||||| |||| |||||||| ||||| | ||||||| |||||||||| || |||| ||| |||| || |||||| |||||||||||| ||||||| | |
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| T |
36995772 |
aaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctatta |
36995871 |
T |
|
| Q |
425 |
tggctgatgatg |
436 |
Q |
| |
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|||||||||||| |
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| T |
36995872 |
tggctgatgatg |
36995883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 36986225 - 36986329
Alignment:
| Q |
262 |
ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg |
361 |
Q |
| |
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||||||||| | ||| | || |||||||||||| || ||| |||| |||||||||| | || ||||| |||| |||||||| ||||| ||||||||| | |
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| T |
36986225 |
ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg |
36986324 |
T |
|
| Q |
362 |
tagaa |
366 |
Q |
| |
|
||||| |
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|
| T |
36986325 |
tagaa |
36986329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 36984318 - 36984380
Alignment:
| Q |
131 |
ctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttgg |
193 |
Q |
| |
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||||| ||| ||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
36984318 |
ctccattctcaacatcagaatttaacttattgctaaaattctcctgtttcacctcctctttgg |
36984380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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