View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_6 (Length: 440)
Name: NF6548_high_6
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 24224714 - 24224300
Alignment:
| Q |
13 |
aatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaataacttaacactgagttatctattagctaagct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
24224714 |
aatatagataataagataaaataacaaagtgactaacaaatacagttagcgtttcatagaataccaataactcaacactcagttatctattagctaagct |
24224615 |
T |
|
| Q |
113 |
actaactcaagttttctatannnnnnnnnnnnncttatgtatcttaatgcgctcggatttcttcatgtgcgctctttgtattggggagaatcttttgtgg |
212 |
Q |
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||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224614 |
actgactcaagttttctatatttttttgtttttcttatgtatcttaatgcactcggatttcttcatgtgcgctctttgtattggggagaatcttttgtgg |
24224515 |
T |
|
| Q |
213 |
taatatattccattttggtcagtttnnnnnnnnnnnnntt---atatgtcacgttgatgaattgaatatgatatttattttgaatggttgtaataaatcg |
309 |
Q |
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|||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224514 |
taatatattccattttggtcggtttaagaagaaaaaaaattatatatgtcacattgatgaattgaatatgatatttattttgaatggttgtaataaatcg |
24224415 |
T |
|
| Q |
310 |
ttccaacattatttacttttttaaacatgaaagctcaacttgataggaaaagaaggtaaaaatgacttttttatacttaattatgttnnnnnnnttctgg |
409 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
24224414 |
ttccaacattatttacttttttaaacatgaaagatcaacttgataggaaaagaaggt--aaatgacttttttatacttaattatgttaaaaaaattctgt |
24224317 |
T |
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| Q |
410 |
tgtaatttatagatatt |
426 |
Q |
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||||||||||||||||| |
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| T |
24224316 |
tgtaatttatagatatt |
24224300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 11096948 - 11096893
Alignment:
| Q |
32 |
aataacaaagtgactaacaaatacagttagagtttcatagaataccaataacttaa |
87 |
Q |
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|||||||||| |||||| ||| |||||||||||||||||||||||| ||| ||||| |
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| T |
11096948 |
aataacaaagagactaaaaaagacagttagagtttcatagaatacctataccttaa |
11096893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 42631524 - 42631591
Alignment:
| Q |
13 |
aatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaat |
80 |
Q |
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|||||||||||| ||||| |||||||||| |||||||||| || ||||||||||||||||||| |||| |
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| T |
42631524 |
aatatagataatcagatagaataacaaagagactaacaaaaactgttagagtttcatagaatatcaat |
42631591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 814352 - 814396
Alignment:
| Q |
45 |
ctaacaaatacagttagagtttcatagaataccaataacttaaca |
89 |
Q |
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|||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
814352 |
ctaacaaagacagctagagtttcatagaataccaatagcttaaca |
814396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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