View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_high_8 (Length: 411)
Name: NF6548_high_8
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 44629384 - 44629110
Alignment:
| Q |
15 |
tatgctgactaagttagtatctagttgaaaataaactttaattgtaagttgttttattttatcaataaagagaagcaattatttatttaacttctaaaat |
114 |
Q |
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| T |
44629384 |
tatgctgactaagttagtatctagttgaaaataaactttaattgtaagttgttttattttatcaataaagagaagcaattatttatttaacttctaaaat |
44629285 |
T |
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| Q |
115 |
gtatttcctaataataccccttcatctatcacccttataaatagaagcaaaatgtgagacatgttacatagtctttgagggtgtgaaataccttgttcaa |
214 |
Q |
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| T |
44629284 |
gtatttcctaataataccccttcatctatcaccgttataaatagaagcaaaatgtgagacatgttacatagtctttgagggtgtgaaataccttgttcaa |
44629185 |
T |
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| Q |
215 |
aagtacaacaatgtttcatacaatggttaggataatacatagtcctccttttatcattttttcacattatcaaac |
289 |
Q |
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| T |
44629184 |
aagtacaacaatgtttcatacaatggttaggataatacatagtcctccttttatcattttttcacattatcaaac |
44629110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 44629066 - 44628973
Alignment:
| Q |
305 |
tcattatgtgtgttgatttatttatttttaatcaaaagcacttacaataaaatgttaatttcatacaggagtgttttttcacattgttaatgat |
398 |
Q |
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| T |
44629066 |
tcattatgtgtgttgatttatttatttttaatcaaaagcacttacaataaaatgttaatttcatacaggagtattttttcacattgttaatgat |
44628973 |
T |
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