View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_low_11 (Length: 401)
Name: NF6548_low_11
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 44634228 - 44634592
Alignment:
| Q |
19 |
aatgtaaaaattactgaaaaaagaacagcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatatgtaagcaataacaa |
118 |
Q |
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| T |
44634228 |
aatgtaaaaattactgaaaaaagaacagcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatatgtaagcaatagcaa |
44634327 |
T |
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| Q |
119 |
ttgtcattgcactgcacaatgctctccttggatctggcttttctagtcccagctcaaatctgccatgccatcgagtaagcaatttgttaattaatttgtt |
218 |
Q |
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| T |
44634328 |
ttgtcattgcactgcacaatgctctcattggatctggcttttctagtcccagctcaaatctgccatgccatcgagtaagcaatttgttaattaatttgtt |
44634427 |
T |
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| Q |
219 |
caagcactcacgaaataatacattctttcctcttctccaagaaagttatttaaacaaaaggtacacttgaataaacaattttgttaaaaaatgtgactcc |
318 |
Q |
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| T |
44634428 |
caagcactcacgaaataatacattctttcctcttctccaagaaagttatttaaacaaaaggtacacttgaataaacaattttgttaaaaaatgtgactcc |
44634527 |
T |
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| Q |
319 |
aagaacaagcaatgatgttaaaaattactttgagagattcagttgcttgatattataagaacaac |
383 |
Q |
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| T |
44634528 |
aagaacaagcaatgatgttaaaaattactttgagagattcagttgcttgatattatgagaacaac |
44634592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 44622761 - 44622948
Alignment:
| Q |
31 |
actgaaaaaagaacagcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatatgtaagcaataacaattgtcattgcac |
130 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
44622761 |
actgaaacaagaacagcctctgatgcatttcgaatgaacatgtaaggaatgagaggaacaattccacccaatacgtaagcaatagcaattgtcattgcac |
44622860 |
T |
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| Q |
131 |
tgcacaatgctctccttggatctggcttttctagtcccagctcaaatctgccatgccatcgagtaagcaatttgttaattaatttgttcaa |
221 |
Q |
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| T |
44622861 |
tatacaatgctcttctcggatctggcttctctagtcccaactcaaacctgccacgcca---agtaaccaatttgttaattaatttgttcaa |
44622948 |
T |
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