View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_low_13 (Length: 348)
Name: NF6548_low_13
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 11585832 - 11585507
Alignment:
| Q |
20 |
gtgttttgggtattagttaggttggaaaatttttcagtggaatttcctttcaatgctcaagtccttttaatattggaaacaaaattaaggtaaattaatt |
119 |
Q |
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| T |
11585832 |
gtgttttgggtattagtgaggatggaaaatttttcagtggaatttcctttcaatgctcaagtccttttgatattggaaacaaaattaaggtaaattaatt |
11585733 |
T |
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| Q |
120 |
tagtattagatgtaagggttttatgtaaggattttatttgatgtcgcgaggagtcctaaatcccaagatgtgttgaaaacgtgtagattggagattttga |
219 |
Q |
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| T |
11585732 |
tagtactagatgtaagggttttatgtaaggattttatttgatgttgcaaggagtcctaaatcctaaaatgtgttgaaaacgtgtagattggagatattga |
11585633 |
T |
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| Q |
220 |
aggtgaggttatggaaattgaaatattcagaaccaaggtgttaatatctcagaatttgttcatacaaatatcaaattctaatttttctagtaaggtattt |
319 |
Q |
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| T |
11585632 |
aggtgaggttatggaaattggaatattcagaaccaaggtattaacatctcagaatttgctcatacaaataccaaatttcaatttttctagtaaggtattt |
11585533 |
T |
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| Q |
320 |
gtgttatttatagttaattcacacat |
345 |
Q |
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| T |
11585532 |
gtgttatttgtagttaattcacacat |
11585507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 11589257 - 11589076
Alignment:
| Q |
1 |
tttctaggagctgtcagaggtgttttgggtattagttaggttggaaaatttttcagtggaatttcctttcaatgctcaagtccttttaatattggaaaca |
100 |
Q |
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|||||| || ||||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
11589257 |
tttctatgaactgtcagtggtgctttgggtattagtgaggttggaaattttttcagtggaatttcctttcaatgctcaagtccttttgaaattgaaaaca |
11589158 |
T |
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| Q |
101 |
aaattaaggtaaattaatttagtattagatgtaagggttttatgtaaggattttatttgatgtcgcgaggagtcctaaatcc |
182 |
Q |
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| T |
11589157 |
aaattaaggtaaattaatttagtactagatgtatgggttttatgtaaggattttatttgatgtcgcaaggagtcctaaatcc |
11589076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 187 - 345
Target Start/End: Complemental strand, 11587753 - 11587595
Alignment:
| Q |
187 |
atgtgttgaaaacgtgtagattggagattttgaaggtgaggttatggaaattgaaatattcagaaccaaggtgttaatatctcagaatttgttcatacaa |
286 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| |
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| T |
11587753 |
atgtgttgaaaacatgtagattggagatattgaaggtgaggttatggaaattggaatattcagaatcaaggtgttaacatctcagaatttgctcatacaa |
11587654 |
T |
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| Q |
287 |
atatcaaattctaatttttctagtaaggtatttgtgttatttatagttaattcacacat |
345 |
Q |
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||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11587653 |
ataccaaatttcaatttttctagtaaggtatttgtgttatttgtagttaattcacacat |
11587595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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