View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6548_low_20 (Length: 330)

Name: NF6548_low_20
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6548_low_20
NF6548_low_20
[»] chr8 (4 HSPs)
chr8 (1-183)||(7222865-7223058)
chr8 (212-330)||(7222721-7222838)
chr8 (79-183)||(40995840-40995945)
chr8 (108-183)||(9799269-9799344)
[»] chr5 (7 HSPs)
chr5 (83-178)||(21067574-21067669)
chr5 (110-183)||(24233161-24233234)
chr5 (111-168)||(39031651-39031708)
chr5 (127-178)||(19187142-19187193)
chr5 (131-178)||(39753340-39753387)
chr5 (121-183)||(38282493-38282555)
chr5 (108-177)||(28988416-28988485)
[»] chr2 (2 HSPs)
chr2 (108-183)||(9521083-9521158)
chr2 (129-177)||(16634423-16634471)
[»] chr4 (2 HSPs)
chr4 (108-183)||(27756453-27756528)
chr4 (106-183)||(19328802-19328879)
[»] chr3 (4 HSPs)
chr3 (110-157)||(1294951-1294998)
chr3 (77-183)||(8936099-8936204)
chr3 (121-177)||(43178598-43178654)
chr3 (103-176)||(52397372-52397445)
[»] chr1 (1 HSPs)
chr1 (108-178)||(32022638-32022708)
[»] scaffold0272 (1 HSPs)
scaffold0272 (108-183)||(6090-6165)
[»] chr7 (2 HSPs)
chr7 (129-183)||(7883761-7883815)
chr7 (108-177)||(30486975-30487044)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 7223058 - 7222865
Alignment:
Q  1 cattttaatcatgacataagaactactaattaattcagcgacaaacgactcataagtcatactatgtgattacaataagggtaatgttaatc-------- 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |            
T  7223058 cattttaatcatgacataagaactactaattaattcagcgacaaacgactcataagtcatactatgtgattacaatatgggtaatgttaacccgtgtcgt 7222959  T
Q  93 -----agtgcctccagatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
         ||||||||| || | |||||||||||||||||||||||| |||||||||||||||||||||||  | |||||||||  |||||||| ||||    
T  7222958 tatctagtgcctccggacactggttaaggagttaaatataataaatattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgtta 7222865  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 7222838 - 7222721
Alignment:
Q  212 tttccttaactagtgtctggaggcaccggttaacttgacctttgctgtaattaatagattagattttagtctacaatcaacgttgactctaaatagcatc 311  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  7222838 tttccttaactagtgtctggatgcaccggttaacatgacctt-gctataattagtagattagattttagtctacaatccacgttgactctaaatagcatc 7222740  T
Q  312 tatcttccataaatctttg 330  Q
    |||||||||||||||||||    
T  7222739 tatcttccataaatctttg 7222721  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 40995945 - 40995840
Alignment:
Q  79 gggtaatgttaatcagtgcctccagat-attggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 177  Q
    |||||||||||| |||||| ||||||  |||| |||| || | |||| || ||||||||||||||||||||||| |||||| | |||||||  |||||||    
T  40995945 gggtaatgttaaccagtgcttccagagcattgattaaagaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaa 40995846  T
Q  178 gcgtta 183  Q
    | ||||    
T  40995845 gtgtta 40995840  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 9799344 - 9799269
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    ||||||||||||||||| |  |||||||||||||| || ||||| |||||| | || |||||||||||||| ||||    
T  9799344 tggttaaggagttaaatgtggtaagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgtta 9799269  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 21067574 - 21067669
Alignment:
Q  83 aatgttaatcagtgcctccagatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 178  Q
    |||||||| |||||||||| || | |||||||||||| |||| || ||||||||||||||||| ||||| |||||  | |||||||| ||||||||    
T  21067574 aatgttaaccagtgcctccggaaactggttaaggagtcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaag 21067669  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 24233161 - 24233234
Alignment:
Q  110 gttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    |||||||||| |||| ||||||||||| ||||| || |||||||||||| | ||||||| ||||||||| ||||    
T  24233161 gttaaggagtcaaatgtaataagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgtta 24233234  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 39031651 - 39031708
Alignment:
Q  111 ttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaa 168  Q
    |||||||||||||| |  ||| ||||||||| |||||| |||||||||||||||||||    
T  39031651 ttaaggagttaaatgtggtaaatattacattaaaatttatgctgtcaattattcaaaa 39031708  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 19187142 - 19187193
Alignment:
Q  127 aataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 178  Q
    ||||||| ||||||||||||||||| |||||| | |||||||| ||||||||    
T  19187142 aataagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaag 19187193  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 39753387 - 39753340
Alignment:
Q  131 agtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 178  Q
    ||||||||||||||| |||||||||||| | |||||||| ||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaag 39753340  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 38282493 - 38282555
Alignment:
Q  121 aaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    ||||||||||| ||||||||| ||||||||| |||||| | || |||| ||||||||| ||||    
T  38282493 aaatataataaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgtta 38282555  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 28988485 - 28988416
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 177  Q
    |||||||||||| |||| |  ||| |||||||||||||||||||  ||||| | |||||||| |||||||    
T  28988485 tggttaaggagtcaaatgtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaa 28988416  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 9521158 - 9521083
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    |||||||||||| |||| | |||||||||||||||||| |||||||||||| | || |||||||||||||| ||||    
T  9521158 tggttaaggagtcaaatgtgataagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgtta 9521083  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 16634423 - 16634471
Alignment:
Q  129 taagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 177  Q
    |||||||||||||| ||||||||||||||| | |||||||| |||||||    
T  16634423 taagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaa 16634471  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 27756453 - 27756528
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    |||||||||| | |||| || ||||||||||||||||||||||| |||||| | |||||||| |||||||| ||||    
T  27756453 tggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgtta 27756528  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 19328802 - 19328879
Alignment:
Q  106 attggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    |||||||||| ||| |||| |  |||||||||||||| || ||||||| |||| | ||||||||||||||||| ||||    
T  19328802 attggttaagaagtcaaatgtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgtta 19328879  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 1294998 - 1294951
Alignment:
Q  110 gttaaggagttaaatataataagtattacattgaaatttgtgctgtca 157  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  1294998 gttaagaagtcaaatgtaataagtattacattgaaatttgtgctgtca 1294951  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 8936204 - 8936099
Alignment:
Q  77 aagggtaatgttaatcagtgcctccagatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaa 176  Q
    |||||||||||||| |||||||||  |  | ||||||||||||||||| |   |||||||||||||||| ||||||||||||   || ||||| ||||||    
T  8936204 aagggtaatgttaaccagtgcctcgggc-actggttaaggagttaaatgtggcaagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaa 8936106  T
Q  177 agcgtta 183  Q
    || ||||    
T  8936105 agtgtta 8936099  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 43178598 - 43178654
Alignment:
Q  121 aaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 177  Q
    |||| |||||| |||||||||||||||||| ||||||| | || |||||||||||||    
T  43178598 aaatgtaataaatattacattgaaatttgtactgtcaacttttgaaaagtataaaaa 43178654  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 52397372 - 52397445
Alignment:
Q  103 gatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaa 176  Q
    ||||||||||||||| |||||| ||  ||||||||||||  |||||||| |||||| |  | ||||||||||||    
T  52397372 gatattggttaaggaattaaatgtagaaagtattacattagaatttgtgttgtcaacttctaaaaagtataaaa 52397445  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 32022708 - 32022638
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 178  Q
    |||||||||||| |||| |  ||||||||||||||||| |||| ||||||| | || ||||||||||||||    
T  32022708 tggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataaaaag 32022638  T

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Target: scaffold0272 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 6090 - 6165
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    |||||||||||| |||| || |||||||| ||||| ||||| ||||||||| | |||||||  |||||||| ||||    
T  6090 tggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgtta 6165  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 7883815 - 7883761
Alignment:
Q  129 taagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 183  Q
    ||||| ||| ||||||||||||||||||||||  ||||||| |||||||| ||||    
T  7883815 taagttttaaattgaaatttgtgctgtcaattcctcaaaagcataaaaagggtta 7883761  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 30487044 - 30486975
Alignment:
Q  108 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 177  Q
    |||||||||||| |||| |  |||||||| ||||||||||||||| ||||| | || |||| ||||||||    
T  30487044 tggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaa 30486975  T

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