View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6548_low_22 (Length: 317)
Name: NF6548_low_22
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_22 |
 | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 4623808 - 4623525
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||| |||||| |||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
4623808 |
caaactagcaaagcttctttaccttaaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcc |
4623709 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgtt |
217 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
4623708 |
ttt-gatggtttcacggactttaactttgagaccattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaagacataccctctctttct |
4623610 |
T |
|
| Q |
218 |
caatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtcttgttccac |
302 |
Q |
| |
|
| || ||||| | |||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623609 |
gattcaataaggaagaatttctatcatcccttttgtgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccac |
4623525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 4627648 - 4627372
Alignment:
| Q |
21 |
actaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttt |
120 |
Q |
| |
|
|||| ||||| | |||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
4627648 |
actagcaaaattacttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgccttt |
4627549 |
T |
|
| Q |
121 |
tgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaa |
220 |
Q |
| |
|
||||||||| ||| |||| |||||||||||| ||||||||| |||| ||| | ||||||||||| ||||||||||||| |||||| |||||| ||| |
|
|
| T |
4627548 |
-gatggtttcgatgattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaa |
4627450 |
T |
|
| Q |
221 |
tctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtcttgtt |
298 |
Q |
| |
|
|| ||||||| ||| ||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4627449 |
tcaataagaaagaacttccttcagccctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgtt |
4627372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 4258803 - 4259086
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| | || ||||||||| ||| ||| |||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
4258803 |
caaactagctaagcttcttcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgcc |
4258902 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgtt |
217 |
Q |
| |
|
|| |||||||||| ||| |||| ||||||||| |||| ||||||| | |||||| ||||||||||||| ||||||||||||| | ||||||| ||| | |
|
|
| T |
4258903 |
gtt-gatggtttcattgattttacctttgagactattcaagatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttct |
4259001 |
T |
|
| Q |
218 |
caatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtcttgttccac |
302 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||| ||||||||||| ||||||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
4259002 |
caatctataagaaagaacttccttcagccctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccac |
4259086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 4594503 - 4594292
Alignment:
| Q |
26 |
caaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||| |||| |||| |
|
|
| T |
4594503 |
caaaacttcttcaccttagaggatttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgcctta-gatg |
4594405 |
T |
|
| Q |
126 |
gtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaatctat |
225 |
Q |
| |
|
||||| ||| |||| |||||| ||||| ||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
4594404 |
gtttccctggttttagctttgaaaccataccagatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctcttgctcaatctat |
4594305 |
T |
|
| Q |
226 |
aagaacgaatttc |
238 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
4594304 |
aagaaagaatttc |
4594292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 4575948 - 4575680
Alignment:
| Q |
26 |
caaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatg |
125 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
4575948 |
caaaactgcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcc-tttgatg |
4575850 |
T |
|
| Q |
126 |
gtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaatctat |
225 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| ||||||||| ||| ||| |||||||||| | ||||| | ||| |||||||| | |||| || |
|
|
| T |
4575849 |
gtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaat |
4575750 |
T |
|
| Q |
226 |
aagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtctt |
295 |
Q |
| |
|
| |||||| || || ||| |||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
4575749 |
cataacgaactttcgccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtctt |
4575680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 4265697 - 4265967
Alignment:
| Q |
31 |
cttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatggtttc |
130 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
4265697 |
cttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatt-ctcttgatggtttc |
4265795 |
T |
|
| Q |
131 |
actgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaatctataagaa |
230 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||||| |||| | ||||||| ||||| || | | |
|
|
| T |
4265796 |
agtgactttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatga |
4265895 |
T |
|
| Q |
231 |
cgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtcttgttccac |
302 |
Q |
| |
|
|||| ||| |||| ||||| ||||||||||| || ||||||| | ||||||| || |||| || |||||| |
|
|
| T |
4265896 |
cgaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccac |
4265967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 4618802 - 4618621
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
4618802 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaa-ggc |
4618704 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
4618703 |
ttttgatggtttcacggactttaactttgagagcattccagatggtttaacaccaatggaaggtgatggtgatgttagtcaag |
4618621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 4507412 - 4507237
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| | || |||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4507412 |
caaactagctaagcttcttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcc |
4507313 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgtta |
194 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
4507312 |
-tttgatggtttcactgattttaactttgagactctaccagatggtttaactccaatggatggtgatggtgatgtta |
4507237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 4562155 - 4561887
Alignment:
| Q |
26 |
caaaacttcttcaccttagaggatttcacgtaa-cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgat |
124 |
Q |
| |
|
||||||| |||||||| ||||| |||||| ||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
4562155 |
caaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgccttt-gat |
4562058 |
T |
|
| Q |
125 |
ggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaatcta |
224 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| ||||||||| ||| |||||||||||| ||| ||||| | ||| |||||||| | |||| | |
|
|
| T |
4562057 |
ggtttcactgactttaactttgagactataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctcttggtgaatcaa |
4561958 |
T |
|
| Q |
225 |
taagaacgaatttctttcagcccttc---aatgaacttcttgttaaacttcatgactctgccactgctggtctt |
295 |
Q |
| |
|
| | |||||| |||||| | |||| |||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
4561957 |
tcataacgaa---ctttcaccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtctt |
4561887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 4517840 - 4517597
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
4517840 |
aaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcc- |
4517742 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttc |
218 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||| ||||||| || ||||| ||||||||||||| ||||| ||| ||||||| |
|
|
| T |
4517741 |
tttgatggtttcactgattttacctttgagactattccagatggtttaactccgatagaaggcgatggtgatgttagtcaagacattatctctctttccg |
4517642 |
T |
|
| Q |
219 |
aatctataagaacgaatttctttcagcccttcaatgaacttcttg |
263 |
Q |
| |
|
| || ||||||| |||||||| ||| |||||| ||||||||||| |
|
|
| T |
4517641 |
attcaataagaaagaatttctatcaccccttctgtgaacttcttg |
4517597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 4502943 - 4503101
Alignment:
| Q |
41 |
ttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatggtttcactgacttta |
140 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||| |||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc-tttgatggtttcaatgatttta |
4503041 |
T |
|
| Q |
141 |
actttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
4503042 |
cctttgagaccataccagatggtttaactccggtggaaggtgatggtgatgttagtcaag |
4503101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 4488833 - 4489005
Alignment:
| Q |
27 |
aaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatgg |
126 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
4488833 |
aaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc-tttgatgg |
4488931 |
T |
|
| Q |
127 |
tttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
||| ||||| |||| ||||||||| |||||||||||| ||||||||| || |||||||| ||||||| ||||| |
|
|
| T |
4488932 |
tttaactgattttagctttgagactattccagatggtttaactccaacagatggtgatggcgatgttagtcaag |
4489005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 302
Target Start/End: Original strand, 4298172 - 4298408
Alignment:
| Q |
65 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatggtttcactgactttaactttgagaccattccagatggta |
164 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaa-agcttttgatggtttcaccaactttagctttgagactattccagatggtc |
4298270 |
T |
|
| Q |
165 |
taactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaacttcttgt |
264 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||||||| |||||| |||||| ||||| || |||| ||| ||| |||||||||| ||||||||||| |
|
|
| T |
4298271 |
tgactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttggtgaacttcttgc |
4298370 |
T |
|
| Q |
265 |
taaacttcatgactctgccactgctggtcttgttccac |
302 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
4298371 |
taaacttcgtgattctgccactgctggtcttgtaccac |
4298408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 4581512 - 4581329
Alignment:
| Q |
21 |
actaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttt |
120 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |
|
|
| T |
4581512 |
actagcaaagcttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaa-agcgtt |
4581414 |
T |
|
| Q |
121 |
tgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcata |
205 |
Q |
| |
|
|||||||||||| || |||| ||||||||| |||||||||||| ||||||| || ||||| ||| ||||||||| ||||| |||| |
|
|
| T |
4581413 |
tgatggtttcaccgattttacctttgagactattccagatggtttaactccgatagaaggcgatagtgatgttaatcaagacata |
4581329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 3173503 - 3173323
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||| ||| |||| ||| |
|
|
| T |
3173503 |
aaactagcaaaactacttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcct |
3173404 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
|| |||||||||| ||| |||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
3173403 |
tt-gatggtttcaatgattttaactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaag |
3173323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 4558625 - 4558445
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||| |||||||| |||||||| ||||||||| |||| || |
|
|
| T |
4558625 |
aaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcc- |
4558527 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||| ||| |||||||| ||||||| ||||| |
|
|
| T |
4558526 |
tttgatggtttcactgattttagctttgagactattccggatggtttaactccaacggatggtgatggcgatgttagtcaag |
4558445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 4587132 - 4586952
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| || ||||||| | |||| || |
|
|
| T |
4587132 |
aaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcc- |
4587034 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
||||||| ||| ||||| |||| ||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
4587033 |
tttgatgatttaactgattttagctttgagactattccagatggtttaactccaacggatggtgatggtgatgttagtcaag |
4586952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 4612345 - 4612517
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
4612345 |
caaactagcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
4612444 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatg |
191 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| | || ||||||||| || || ||| ||||| |||||||||| |
|
|
| T |
4612445 |
-tttgttggtttcactgattttacctttgaggctataccagatggtctaccttcaaacgaaggcgatggtgatg |
4612517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 4569570 - 4569323
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||| || |
|
|
| T |
4569570 |
aaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aatcacaaacatttgctcaaatcaagaggtccaaaagcc- |
4569476 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttc |
218 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||| ||||||| | |||||| |||||||| ||| ||||| || |||||||| | |
|
|
| T |
4569475 |
tttgatggtttcactgattttacctttgagactattccagatggtttaactccgacagaaggttatggtgatattagtcaagaaattgtctctcttgatg |
4569376 |
T |
|
| Q |
219 |
aatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaactt |
271 |
Q |
| |
|
| || ||||||| |||||||| ||| || || ||||||||||| ||||||| |
|
|
| T |
4569375 |
attcaataagaaagaatttctatcaccctttttgtgaacttcttgctaaactt |
4569323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 4603610 - 4603392
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
4603610 |
aaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcc- |
4603512 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttc |
218 |
Q |
| |
|
|| || || |||||||| |||| |||||| || || |||||||| |||| || ||||||||||||| | |||||| ||||| |||| ||| || || |
|
|
| T |
4603511 |
ttagacggcttcactgattttagctttgaaacaatcccagatggactaacaccgatggaaggtgatgataatgttagtcaagatgtaccttctatttctc |
4603412 |
T |
|
| Q |
219 |
aatctataagaacgaatttc |
238 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
4603411 |
aatctataagaaagaatttc |
4603392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 4471414 - 4471142
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||| ||||||||| ||||||||| ||| || |
|
|
| T |
4471414 |
aaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgatt-ct |
4471316 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| | ||||||| ||| ||||| ||||| ||| || ||| |
|
|
| T |
4471315 |
cttgatggtttcactgactttaactttgagaccattccaaatggttttactgcaatggaaag---tggtgatcttattcaagacatacactccttttttc |
4471219 |
T |
|
| Q |
219 |
aatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtctt |
295 |
Q |
| |
|
||| || | ||| | ||| |||| ||||| |||||||||| || |||| ||| ||||||||||||||||||| |
|
|
| T |
4471218 |
gatcaatcatgacggacttccttcaaccctttggtgaacttcttactagacttgatgcctctgccactgctggtctt |
4471142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 4482357 - 4482200
Alignment:
| Q |
27 |
aaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatgg |
126 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| || |||||||| |
|
|
| T |
4482357 |
aaaactacttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcc-tttgatgg |
4482259 |
T |
|
| Q |
127 |
tttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatg |
185 |
Q |
| |
|
||||||||| |||| |||||| || || ||||||||| |||||||||| |||||||||| |
|
|
| T |
4482258 |
tttcactgattttacctttgaaacgataccagatggtttaactccaattgaaggtgatg |
4482200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 4513614 - 4513775
Alignment:
| Q |
26 |
caaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatg |
125 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| || | ||||||||| |
|
|
| T |
4513614 |
caaaactacttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaa-tgcttttgatg |
4513712 |
T |
|
| Q |
126 |
gtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtg |
188 |
Q |
| |
|
||||||| || ||| ||||||||| ||||| |||||| ||||||||||||| || ||||||| |
|
|
| T |
4513713 |
gtttcaccgattttcgctttgagactattcctgatggtttaactccaatggatggcgatggtg |
4513775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 4599664 - 4599488
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| || ||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
4599664 |
caaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaatt-c |
4599566 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttac |
195 |
Q |
| |
|
| | ||||||||||||| ||| ||| ||||| |||||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
4599565 |
tcgtaatggtttcactgatttttccttcgagactattccagatggtttaactccaatagatggtgatggtgatgttac |
4599488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 4565522 - 4565319
Alignment:
| Q |
26 |
caaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| |||| || || |||| |
|
|
| T |
4565522 |
caaaacttcttcaccttagaggatttcatataacctttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgcc-ttagatg |
4565424 |
T |
|
| Q |
126 |
gtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgttcaatctat |
225 |
Q |
| |
|
||| | || ||| |||||| ||||| ||||||||| |||| || || ||||||||||||||||||| ||||| |||| ||||||| ||||||||| |
|
|
| T |
4565423 |
gttcccgtggtttttgctttgaaaccataccagatggtctaacaccgatagaaggtgatggtgatgttagtcaagatgtaccttctcttgctcaatctat |
4565324 |
T |
|
| Q |
226 |
aagaa |
230 |
Q |
| |
|
||||| |
|
|
| T |
4565323 |
aagaa |
4565319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 4572465 - 4572286
Alignment:
| Q |
20 |
aactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcctt |
119 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||| |||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||| || | |
|
|
| T |
4572465 |
aactagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcc-t |
4572367 |
T |
|
| Q |
120 |
ttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||| || |||||| ||| || ||||| ||||||| ||||| |
|
|
| T |
4572366 |
ttgatggtttcaccaattttaactttgagagtattccagatggtttatctccaacggatggcgatggcgatgttagtcaag |
4572286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 4462699 - 4462564
Alignment:
| Q |
27 |
aaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattccttttgatgg |
126 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||| || | ||||| |
|
|
| T |
4462699 |
aaaactacttcaccttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaatt-ctctagatgg |
4462601 |
T |
|
| Q |
127 |
tttcactgactttaactttgagaccattccagatggt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4462600 |
tttcactgactttaactttgagaccattccaaatggt |
4462564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 4255478 - 4255526
Alignment:
| Q |
60 |
ctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4255478 |
ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggt |
4255526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 4503154 - 4503196
Alignment:
| Q |
253 |
tgaacttcttgttaaacttcatgactctgccactgctggtctt |
295 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4503154 |
tgaatttcttgttaaacttaatgactctgccactgctggtctt |
4503196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 4483534 - 4483568
Alignment:
| Q |
74 |
aatacaatcacaaacgcttgctcaaatcaagaggt |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggt |
4483568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 4581281 - 4581237
Alignment:
| Q |
253 |
tgaacttcttgttaaacttcatgactctgccactgctggtcttgt |
297 |
Q |
| |
|
||||||||||| || |||| |||||||||||||| |||||||||| |
|
|
| T |
4581281 |
tgaacttcttgctagacttaatgactctgccacttctggtcttgt |
4581237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 3310 - 3433
Alignment:
| Q |
180 |
gtgatggtgatgttactcaaggcataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactc |
279 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3310 |
gtgatggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactc |
3409 |
T |
|
| Q |
280 |
tgccactgctggtcttgttccaca |
303 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3410 |
tgccactgctggtcttgttccaca |
3433 |
T |
|
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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 24104596 - 24104313
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||| | ||||| |
|
|
| T |
24104596 |
caaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattc- |
24104498 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgtt |
217 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| |||| | ||||||| |
|
|
| T |
24104497 |
tcttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtg |
24104398 |
T |
|
| Q |
218 |
caatctataagaacgaatttctttcagcccttcaatgaacttcttgttaaacttcatgactctgccactgctggtcttgttccac |
302 |
Q |
| |
|
||||| || | ||||| ||| |||||||||| ||||||||||| || ||||||| | ||||||| || |||| || |||||| |
|
|
| T |
24104397 |
caatcaatcatgacgaacttccttcagccctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccac |
24104313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1259 - 1043
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||||||| ||||||||||||| | ||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| || | || |
|
|
| T |
1259 |
caaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgcc |
1160 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgtt |
217 |
Q |
| |
|
|| |||||||||||||| |||| |||||| ||||| ||||||||| |||| ||| | ||||||||||||||||||| |||| |||| |||||| | |
|
|
| T |
1159 |
-ttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgt |
1064 |
T |
|
| Q |
218 |
caatctataagaacgaatttc |
238 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
1063 |
caatctataagaaagaatttc |
1043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1676022 - 1675806
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||||||| ||||||||||||| | ||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| || | || |
|
|
| T |
1676022 |
caaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgcc |
1675923 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgtt |
217 |
Q |
| |
|
|| |||||||||||||| |||| |||||| ||||| ||||||||| |||| ||| | ||||||||||||||||||| |||| |||| |||||| | |
|
|
| T |
1675922 |
-ttggatggtttcactgattttagctttgaaaccatcccagatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgt |
1675827 |
T |
|
| Q |
218 |
caatctataagaacgaatttc |
238 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
1675826 |
caatctataagaaagaatttc |
1675806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 20862438 - 20862581
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||| || |||| |||||||| || ||||||||||||||||||||||| || |||| ||| ||| || |
|
|
| T |
20862438 |
aaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggt-ccaataccc |
20862536 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggt |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
20862537 |
tttgatggtttcactgactttcgctttgagaccgttccagatggt |
20862581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 3088245 - 3088065
Alignment:
| Q |
19 |
aaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcct |
118 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||||| |||| || |
|
|
| T |
3088245 |
aaactagcaaaacttcttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaatt-ct |
3088147 |
T |
|
| Q |
119 |
tttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaag |
200 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| || | ||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
3088146 |
cttgatggtttcactgattttgtctttgagactatccaagatggtctaactccaatggaaggtaatggtgatgttagtcaag |
3088065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1282934 - 1282715
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| ||||||| |||||||||||||| ||| || |||||||||| || || |||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
1282934 |
caaactagcaaaactacttcaccttagaggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcc |
1282835 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaaggtgatggtgatgttactcaaggcataccctctcttgtt |
217 |
Q |
| |
|
| |||||||||||||| |||| |||||| ||||| ||||||||| |||| || | ||||||||||||||||||| |||| |||| |||||| | |
|
|
| T |
1282834 |
-ctagatggtttcactgattttagctttgaaaccatcccagatggtctaacatcactagaaggtgatggtgatgttagtcaacatgtaccttctctttgt |
1282736 |
T |
|
| Q |
218 |
caatctataagaacgaatttc |
238 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
1282735 |
caatctataagaaagaatttc |
1282715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 2325 - 2127
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || | | |
|
|
| T |
2325 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaa-tgc |
2227 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaa---ggtgatggtgatgttactcaaggcataccctctctt |
214 |
Q |
| |
|
| ||||||||||| |||| ||| ||| ||||| ||||| |||||| |||||||| ||||| | ||||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
2226 |
tcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctt |
2127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 2078 - 2276
Alignment:
| Q |
18 |
caaactaccaaaacttcttcaccttagaggatttcacgtaacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaattcc |
117 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || | | |
|
|
| T |
2078 |
caaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaa-tgc |
2176 |
T |
|
| Q |
118 |
ttttgatggtttcactgactttaactttgagaccattccagatggtataactccaatggaa---ggtgatggtgatgttactcaaggcataccctctctt |
214 |
Q |
| |
|
| ||||||||||| |||| ||| ||| ||||| ||||| |||||| |||||||| ||||| | ||||||| |||||| ||||| ||||| ||||||| |
|
|
| T |
2177 |
tcttgatggtttcgctgatttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctt |
2276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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