View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6548_low_24 (Length: 306)

Name: NF6548_low_24
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6548_low_24
NF6548_low_24
[»] chr4 (1 HSPs)
chr4 (19-306)||(24224992-24225284)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 24225284 - 24224992
Alignment:
Q  19 tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacgaaaagaacacccatacacatcccaaaacatgacaaaactata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24225284 tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacaaaaagaacacccatacacatcccaaaacatgacaaaactata 24225185  T
Q  119 catatcaatcaacaaccggagcaaaccgaacaaacattaaccaatgacgacaagcatcaaag-----aaacaagtaaataccacggtgaaagaataactt 213  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||    
T  24225184 catatcaaccaacaaccggagcagaccgaacaaacattaaccaatgacgacaagcatcaaagaaattaaacaagtaaataccatggtgaaagaataactt 24225085  T
Q  214 ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatcta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24225084 ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatcta 24224992  T

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