View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_low_27 (Length: 272)
Name: NF6548_low_27
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 49034319 - 49034564
Alignment:
| Q |
17 |
actactatatccattattgcatgtagctagtgagaaggagagatcttatagtatttaactaaggagatatactagacatttatgcatgggaaagtctata |
116 |
Q |
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| T |
49034319 |
actactatatccattattgcatgtagctagtgagaaggagagatcttatagtatttaactaaggagatatactagacatttatgcatgggaaagtctata |
49034418 |
T |
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| Q |
117 |
ttcgttaacctttcccaacctaatagtatcatgattgcagtggattaacctaatgctagtgttcttatgataatgatatgataattattatagtaatgac |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49034419 |
ttcgttaacctttcccaacctaatagtatcataattgcagtggattaacctaatgctagtgttcttatgataatgatatgataattattatagtaatgac |
49034518 |
T |
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| Q |
217 |
gtgctccaagagtcaatggcttaacattgactcaatgtgtcctttg |
262 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
49034519 |
gtgctccaagagtcaatggcttaacaatgactcaatgtgtcatttg |
49034564 |
T |
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