View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6548_low_31 (Length: 254)
Name: NF6548_low_31
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_31 |
 | |
|
| [»] scaffold0101 (1 HSPs) |
| | |
|
| [»] scaffold0699 (1 HSPs) |
| | |
|
| [»] scaffold0368 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7199129 - 7199349
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7199129 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggtgcttttgaca |
7199228 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
7199229 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctcctccagaacc |
7199328 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
7199329 |
aaatacacagccacaaactca |
7199349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 51470301 - 51470087
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaacccta |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51470301 |
gctccaacacggagcgtttggagaaagcggatgaagcgggcacaattgcgggcaaaagcgggcgcgatgtgggtcaaagcgggcgcttttgacaaccctg |
51470202 |
T |
|
| Q |
107 |
tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51470201 |
tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac |
51470102 |
T |
|
| Q |
207 |
gcagccacaaactca |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51470101 |
acagccacaaactca |
51470087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 55681907 - 55682127
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55681907 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcggacaaaagcgggcgcgatgcaggtcaaagcgggcgcttttgaca |
55682006 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55682007 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
55682106 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
55682107 |
aaatacacagccacaaactca |
55682127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37517690 - 37517481
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37517690 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcggg----------cgcttttgaca |
37517601 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | || |
|
|
| T |
37517600 |
accctgtgtaaaatactaaatttcccttaatttaaaactgttttaagggtcatttttgtaatttt-aaaaccctaactattactcttctccaccatagcc |
37517502 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
37517501 |
aaatacacagccacaaactca |
37517481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37521906 - 37521697
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37521906 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcggg----------cgcttttgaca |
37521817 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | || |
|
|
| T |
37521816 |
accctgtgtaaaatactaaatttcccttaatttaaaactgttttaagggtcatttttgtaatttt-aaaaccctaactattactcttctccaccatagcc |
37521718 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
37521717 |
aaatacacagccacaaactca |
37521697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 41055603 - 41055493
Alignment:
| Q |
111 |
aaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41055603 |
aaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacag |
41055504 |
T |
|
| Q |
211 |
ccacaaactca |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
41055503 |
ccacaaactca |
41055493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 375124 - 374967
Alignment:
| Q |
62 |
aagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttccctt-catttaaaaccgttttaagggtcatttttata |
160 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||| |||||||| |||||||||| |||||| |||| || ||||||||||||||||||||| |||| || |
|
|
| T |
375124 |
aagcgggcgcaatgtgggtcaaagcggacgctttttacaaccctgtgtaaaatacaagattttcctttcacttaaaaccgttttaagggtcaattttgta |
375025 |
T |
|
| Q |
161 |
attttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaac |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | || |||||||||| ||||| ||||| |
|
|
| T |
375024 |
attttcaaaaccataactattactcttctctatcataaccaaatacacagcctcaaac |
374967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20790137 - 20790241
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20790137 |
cacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcggacgcgatgcgggtcaaagcgggcgcttttgaca |
20790236 |
T |
|
| Q |
101 |
accct |
105 |
Q |
| |
|
||||| |
|
|
| T |
20790237 |
accct |
20790241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 49811618 - 49811762
Alignment:
| Q |
62 |
aagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtca-tttttata |
160 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||| || |||| |||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
49811618 |
aagcgggcgcgatgtgggttaaagcggacgctttttactcccctgtgtaaaatacaagattgcccttcacttaaaaccgttttaagggtcattttttgta |
49811717 |
T |
|
| Q |
161 |
attttcaaaaccttaactattactcttctccaccagaaccaaatac |
206 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
49811718 |
attttcaaaacgttaacta-tactcttctccatcagaaccaaatac |
49811762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 48236174 - 48236266
Alignment:
| Q |
127 |
ttcatttaaaaccgttttaagggtcattttta-taattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaac |
218 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
48236174 |
ttcacttaaacccgttttaagggtcattttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaac |
48236266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42491056 - 42491101
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcggg |
46 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42491056 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcggg |
42491101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 375157 - 375112
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaat |
52 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
375157 |
gctccaacgcggagcgtttggcgaaagcggctgaagcgggcgcaat |
375112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52005073 - 52004853
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52005073 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
52004974 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52004973 |
accctgtgtaaaatactagattttccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
52004874 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
52004873 |
aaatacacagccacaaactca |
52004853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 20010953 - 20010739
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaacccta |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20010953 |
gctccaacacggagcatttggagaaagcgtatgaagcgggcgcaattgcaggcaaaagcgggcgtgatgcgggtcaaagcgggcgcttttgacaaccctg |
20010854 |
T |
|
| Q |
107 |
tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
20010853 |
tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagagccaaatac |
20010754 |
T |
|
| Q |
207 |
gcagccacaaactca |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20010753 |
acagccacaaactca |
20010739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 52539267 - 52539423
Alignment:
| Q |
65 |
cgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattt |
164 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52539267 |
cgggcgcaatgcgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattt |
52539366 |
T |
|
| Q |
165 |
tcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52539367 |
tcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
52539423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 42872831 - 42872619
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccct |
105 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||||| |||||| |||| | ||||||||| ||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
42872831 |
gctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggcacgatgtgggtcaaagcgggcactttttacaaccct |
42872732 |
T |
|
| Q |
106 |
atgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaata |
205 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
42872731 |
gtgtaaaatacaggatttcccttcacttaaaaccattttaagggtcttttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaata |
42872632 |
T |
|
| Q |
206 |
cgcagccacaaac |
218 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
42872631 |
cacagccgcaaac |
42872619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 52539235 - 52539276
Alignment:
| Q |
11 |
caacacggagtgtttggagaaagcggatgaagcgggcgcaat |
52 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
52539235 |
caacgcggagcgtttggagaaagcggatgaaacgggcgcaat |
52539276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38566498 - 38566718
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38566498 |
cacagttctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttganc |
38566597 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38566598 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
38566697 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
38566698 |
aaatacacagccacaaactca |
38566718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37369874 - 37369654
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37369874 |
cacagtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
37369775 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37369774 |
accctgtgtaaaatactagatttcccttaatttaaaactgttttaacggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
37369675 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
37369674 |
aaatacacagccacaaactca |
37369654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 41992268 - 41992427
Alignment:
| Q |
62 |
aagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataa |
161 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41992268 |
aagcgggcgcaatgcgggtcaaagcgggcgcttttgacaaccatgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaa |
41992367 |
T |
|
| Q |
162 |
ttttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
41992368 |
ttttcaaaaccctaactattactcttctccaccataaccaaatacacagccacaaactca |
41992427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 41020477 - 41020426
Alignment:
| Q |
54 |
gcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccct |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41020477 |
gcgggcaaaagcgggtgcgatgcgggtcaaagcgggcgcttttgacaaccct |
41020426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41992229 - 41992280
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaat |
52 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41992229 |
cacagcgctccaacgcggagtgtttggagaaagcggatgaagcgggcgcaat |
41992280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 18620 - 18834
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaacccta |
106 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18620 |
gctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcatttgacaaccctg |
18719 |
T |
|
| Q |
107 |
tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18720 |
tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac |
18819 |
T |
|
| Q |
207 |
gcagccacaaactca |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18820 |
acagccacaaactca |
18834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39759277 - 39759497
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
39759277 |
cacagtactccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcaatgcgggtcaaagtgggcgcttttgaca |
39759376 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39759377 |
accctgtgtgaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
39759476 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
39759477 |
aaatacacagccacaaactca |
39759497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43823709 - 43823489
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43823709 |
cacagtgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
43823610 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43823609 |
accctgtgtaaattactagatttcccttcatttaaacccgttttaagggtcgtttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
43823510 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
43823509 |
aaatacacagccacaaactca |
43823489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 43067919 - 43068019
Alignment:
| Q |
5 |
gtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcggg-caaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaacc |
103 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43067919 |
gtgctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaacc |
43068018 |
T |
|
| Q |
104 |
c |
104 |
Q |
| |
|
| |
|
|
| T |
43068019 |
c |
43068019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 53286516 - 53286434
Alignment:
| Q |
127 |
ttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagc |
211 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
53286516 |
ttcacttaaaaccgtttttaggc-catttttgtaattttcaaaacct-aactattactcttctccatcagaaccaaatacacagc |
53286434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 53286610 - 53286515
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt |
96 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||| |||||||||||| |||||||| | ||||| || |||| ||||||||||||| ||||||| |
|
|
| T |
53286610 |
cacagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcgggtataaagcttgctcgat-cgggtcaaagcggacgctttt |
53286515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33458595 - 33458375
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33458595 |
cacagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
33458496 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
33458495 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttgagggtcatttttgtaattttcaaaaccctgactattactcttctccaccagaacc |
33458396 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
33458395 |
aaatacacagccacaaactca |
33458375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 34479172 - 34478955
Alignment:
| Q |
4 |
agtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaacc |
103 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
34479172 |
agtgctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcgggcaaaagcgggagcgatgcgggtcaaagcgggcacttttgacaacc |
34479073 |
T |
|
| Q |
104 |
ctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaa |
203 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||| |||| |
|
|
| T |
34479072 |
ctgtgtaaaatattagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctacctattactcttctccaccggaatcaaa |
34478973 |
T |
|
| Q |
204 |
tacgcagccacaaactca |
221 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
34478972 |
tacacatccacaaactca |
34478955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 21472740 - 21472829
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgctttt |
96 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||||||| ||| |||||||| | ||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
21472740 |
gctccaaggcggagcgtttggagaaagcggctgaagcggtcgcgattgcgggtatcaagcgggcgcgatgctggtc-aagcggacgctttt |
21472829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3288711 - 3288501
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3288711 |
cacagtgctccaacgctccgcgtttggagaaagcggatgaagcgggcgcaattgtgggcaaaagcgggcgcgatgcggg----------cgcttttgaca |
3288622 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3288621 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc |
3288522 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
3288521 |
aaatacacagccacaaactca |
3288501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 11843247 - 11843329
Alignment:
| Q |
127 |
ttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagc |
211 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
11843247 |
ttcacttaaaaccgtttttaggc-catttttgtaatttttaaaacct-aactattactcttctccatcagaaccaaatacacagc |
11843329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33516648 - 33516439
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
33516648 |
cacagtgcttcaacgcggagcgtttggagaaagcggatgaagcaggcgcaattgcgggcaaaagcggg-----------tcaaagcgggcgcttttagca |
33516560 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33516559 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcattttggtaattttcaaaaccctaactattactcttctccaccagaacc |
33516460 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
33516459 |
aaatacacagccacaaactca |
33516439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11591352 - 11591557
Alignment:
| Q |
1 |
cacagtgctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgaca |
100 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||| |
|
|
| T |
11591352 |
cacagtgcttcaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggct-------------tgcgaatgaa-gcgggcgcttttgaca |
11591437 |
T |
|
| Q |
101 |
accctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaacc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
11591438 |
accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaatttttaaaaccctaactattactcttctcca-cagaacc |
11591536 |
T |
|
| Q |
201 |
aaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||| |||||||| ||||| |
|
|
| T |
11591537 |
aaatacacagccacagactca |
11591557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 46067327 - 46067212
Alignment:
| Q |
106 |
atgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaata |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46067327 |
atgtaaaatactagatttcccatcatttaaaaccgttttaagtgtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaata |
46067228 |
T |
|
| Q |
206 |
cgcagccacaaactca |
221 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
46067227 |
cacagccacaaactca |
46067212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 48826736 - 48826891
Alignment:
| Q |
62 |
aagcgggcgcgat-gcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttata |
160 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||| || ||||||||||||||| || | ||||||| ||||||||||||||| | |||||||| || |
|
|
| T |
48826736 |
aagcgggcgcaattgcgggtcaaagcgggtgctttttactcccctatgtaaaatacgggactgcccttcacttaaaaccgttttaaag-tcatttttgta |
48826834 |
T |
|
| Q |
161 |
attttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
48826835 |
attttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaa |
48826891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 43613823 - 43613903
Alignment:
| Q |
141 |
ttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43613823 |
ttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
43613903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 48826703 - 48826754
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcggg |
58 |
Q |
| |
|
||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48826703 |
gctccaaggcggagcgtttggagaaagcggctgaagcgggcgcaattgcggg |
48826754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0699 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 205 - 38
Alignment:
| Q |
44 |
gggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctatgtaaaatactagatttcccttcatttaaaaccgttt |
143 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
205 |
gggcacaattgcgggcaaaagcgggcgcgatgcggc----------cgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccattt |
116 |
T |
|
| Q |
144 |
taagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaatacgcagccacaaactca |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
115 |
taagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactca |
38 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 7758 - 7970
Alignment:
| Q |
7 |
gctccaacacggagtgtttggagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccct |
105 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||||| |||||| |||| | ||||||||| ||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
7758 |
gctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggcacgatgtgggtcaaagcgggcactttttacaaccct |
7857 |
T |
|
| Q |
106 |
atgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttataattttcaaaaccttaactattactcttctccaccagaaccaaata |
205 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||| | || || ||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
7858 |
gtgtaaaatacaggatttcccttcacttaaaaccatttaagggttcttttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaata |
7957 |
T |
|
| Q |
206 |
cgcagccacaaac |
218 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
7958 |
cacagccgcaaac |
7970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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