View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6548_low_34 (Length: 251)

Name: NF6548_low_34
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6548_low_34
NF6548_low_34
[»] chr6 (3 HSPs)
chr6 (139-248)||(7367749-7367858)
chr6 (64-130)||(7367472-7367538)
chr6 (13-46)||(7367421-7367454)
[»] chr4 (5 HSPs)
chr4 (161-194)||(30779334-30779367)
chr4 (164-194)||(8165756-8165786)
chr4 (165-194)||(6841816-6841845)
chr4 (165-194)||(17109714-17109743)
chr4 (165-194)||(33883289-33883318)
[»] scaffold0117 (1 HSPs)
scaffold0117 (163-194)||(17959-17990)
[»] chr1 (3 HSPs)
chr1 (163-194)||(42133937-42133968)
chr1 (164-194)||(31763993-31764023)
chr1 (165-194)||(10974628-10974657)
[»] chr5 (6 HSPs)
chr5 (164-194)||(22695560-22695590)
chr5 (165-194)||(11660788-11660817)
chr5 (165-194)||(25545592-25545621)
chr5 (165-193)||(15059655-15059683)
chr5 (166-194)||(20134195-20134223)
chr5 (162-194)||(20134419-20134451)
[»] chr2 (3 HSPs)
chr2 (164-194)||(12449048-12449078)
chr2 (163-192)||(44915284-44915313)
chr2 (165-193)||(24183405-24183433)
[»] scaffold0516 (1 HSPs)
scaffold0516 (165-194)||(1268-1297)
[»] scaffold0249 (1 HSPs)
scaffold0249 (165-194)||(23539-23568)
[»] chr8 (2 HSPs)
chr8 (165-194)||(15809860-15809889)
chr8 (165-194)||(35448630-35448659)
[»] chr3 (2 HSPs)
chr3 (165-194)||(8036795-8036824)
chr3 (165-194)||(50416475-50416504)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 7367749 - 7367858
Alignment:
Q  139 aaaaataaatttaagggtataacttcggctgcggttatggtgcataaggaaatcctaaataaattcaaggacaaaatatctatttccaaaatcattagat 238  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  7367749 aaaaataaattcaagggtataacttcggctgcggttatggtgcataaggaaatcctaaataaattcaaggacaaaatatatatttccaaaaccattagat 7367848  T
Q  239 gtatttaatg 248  Q
    ||||||||||    
T  7367849 gtatttaatg 7367858  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 7367472 - 7367538
Alignment:
Q  64 ctaaggcttctatcgacgaaaaacacatgcagcagtgtgtagtagagggtgagtgggccgaaagtaa 130  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7367472 ctaaggcttctatcgaccaaaaacacatgcagcagtgagtagtagagggtgagtgggccgaaagtaa 7367538  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 7367421 - 7367454
Alignment:
Q  13 aaaatcaagtaatatataaattagttgttttatg 46  Q
    ||||||||||||||||||||||||||||||||||    
T  7367421 aaaatcaagtaatatataaattagttgttttatg 7367454  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 30779334 - 30779367
Alignment:
Q  161 cttcggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||||||    
T  30779334 cttcggctgcggttatggtgcataaggaaatcct 30779367  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 8165756 - 8165786
Alignment:
Q  164 cggctgcggttatggtgcataaggaaatcct 194  Q
    |||||||||||||||||||||||||||||||    
T  8165756 cggctgcggttatggtgcataaggaaatcct 8165786  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 6841816 - 6841845
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  6841816 ggctgcggttatggtgcataaggaaatcct 6841845  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 17109714 - 17109743
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  17109714 ggctgcggttatggtgcataaggaaatcct 17109743  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 33883289 - 33883318
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  33883289 ggctgcggttatggtgcataaggaaatcct 33883318  T

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Target: scaffold0117 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 17990 - 17959
Alignment:
Q  163 tcggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||||    
T  17990 tcggctgcggttatggtgcataaggaaatcct 17959  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 42133937 - 42133968
Alignment:
Q  163 tcggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||||    
T  42133937 tcggctgcggttatggtgcataaggaaatcct 42133968  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 31764023 - 31763993
Alignment:
Q  164 cggctgcggttatggtgcataaggaaatcct 194  Q
    |||||||||||||||||||||||||||||||    
T  31764023 cggctgcggttatggtgcataaggaaatcct 31763993  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 10974628 - 10974657
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  10974628 ggctgcggttatggtgcataaggaaatcct 10974657  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 22695590 - 22695560
Alignment:
Q  164 cggctgcggttatggtgcataaggaaatcct 194  Q
    |||||||||||||||||||||||||||||||    
T  22695590 cggctgcggttatggtgcataaggaaatcct 22695560  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 11660788 - 11660817
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  11660788 ggctgcggttatggtgcataaggaaatcct 11660817  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 25545621 - 25545592
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  25545621 ggctgcggttatggtgcataaggaaatcct 25545592  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 15059683 - 15059655
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcc 193  Q
    |||||||||||||||||||||||||||||    
T  15059683 ggctgcggttatggtgcataaggaaatcc 15059655  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 20134195 - 20134223
Alignment:
Q  166 gctgcggttatggtgcataaggaaatcct 194  Q
    |||||||||||||||||||||||||||||    
T  20134195 gctgcggttatggtgcataaggaaatcct 20134223  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 20134451 - 20134419
Alignment:
Q  162 ttcggctgcggttatggtgcataaggaaatcct 194  Q
    ||||| |||||||||||||||||||||||||||    
T  20134451 ttcgggtgcggttatggtgcataaggaaatcct 20134419  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 12449048 - 12449078
Alignment:
Q  164 cggctgcggttatggtgcataaggaaatcct 194  Q
    |||||||||||||||||||||||||||||||    
T  12449048 cggctgcggttatggtgcataaggaaatcct 12449078  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 44915284 - 44915313
Alignment:
Q  163 tcggctgcggttatggtgcataaggaaatc 192  Q
    ||||||||||||||||||||||||||||||    
T  44915284 tcggctgcggttatggtgcataaggaaatc 44915313  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 24183405 - 24183433
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcc 193  Q
    |||||||||||||||||||||||||||||    
T  24183405 ggctgcggttatggtgcataaggaaatcc 24183433  T

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Target: scaffold0516 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 1297 - 1268
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  1297 ggctgcggttatggtgcataaggaaatcct 1268  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 23539 - 23568
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  23539 ggctgcggttatggtgcataaggaaatcct 23568  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 15809889 - 15809860
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  15809889 ggctgcggttatggtgcataaggaaatcct 15809860  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 35448659 - 35448630
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  35448659 ggctgcggttatggtgcataaggaaatcct 35448630  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 8036795 - 8036824
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  8036795 ggctgcggttatggtgcataaggaaatcct 8036824  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 50416475 - 50416504
Alignment:
Q  165 ggctgcggttatggtgcataaggaaatcct 194  Q
    ||||||||||||||||||||||||||||||    
T  50416475 ggctgcggttatggtgcataaggaaatcct 50416504  T

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