View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_low_35 (Length: 250)
Name: NF6548_low_35
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 38487076 - 38486854
Alignment:
| Q |
16 |
caagcaacccaatataatcaagacaaagattggcctatgacgttgcatcatagtacatatcttcattgtattcgtnnnnnnnnnnntaacggtccaaaga |
115 |
Q |
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| T |
38487076 |
caagcaacccaatataatcaagacaaagattggcctatgacgttgcatcatagtacatatcttcattgtattcgtaaaaaaaaa--taacggtccaaaga |
38486979 |
T |
|
| Q |
116 |
aatgttcatccacaatcctaactgaaatacctcgtcatctatcataatatgagcgacactattaaccatatcacttaaaagatatgctatcaatcaagac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486978 |
aatgttcatccacaatcctaactgaaatacctcgtcatctatcataatatgagcgacactattaaccatatcacttaaaagatatgctatcaatcaagac |
38486879 |
T |
|
| Q |
216 |
ccgcgcaaagttaattggtaatttt |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
38486878 |
ccgcgcaaagttaattggtaatttt |
38486854 |
T |
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