View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6548_low_38 (Length: 237)
Name: NF6548_low_38
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6548_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 44343213 - 44343121
Alignment:
| Q |
130 |
tactcttgaaattacagaaagaattgtttcttatta----tagagaaaaggttgtcattggtgttcgaaaaaaggcatatgagctcatagaagttgt |
222 |
Q |
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| T |
44343213 |
tactcttgaaattacagaa----ttgtttcttattaattatagagaaaaggttgtcattggtgttcgaaaaaaggcatatgagctcatacaagttgt |
44343121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 44343255 - 44343207
Alignment:
| Q |
43 |
gcttggaagatgattttaagggacttcctgcaattaaaggcctactctt |
91 |
Q |
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| T |
44343255 |
gcttggaagatgattttaagggacttcctgcaattaaaggcctactctt |
44343207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44343322 - 44343278
Alignment:
| Q |
1 |
ttgttgattttataagtagtccaacttgacatcatatatagtgct |
45 |
Q |
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| T |
44343322 |
ttgttgattttattagtagtccaacttgacatcatatatagtgct |
44343278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 10493645 - 10493595
Alignment:
| Q |
71 |
tgcaattaaaggcctactcttttcatggttcaaataggtctatttctgaat |
121 |
Q |
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| T |
10493645 |
tgcaatcaaaggcctacttttttcatgcttcaaatgggtctgtttctgaat |
10493595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 10464141 - 10464092
Alignment:
| Q |
71 |
tgcaattaaaggcctactcttttcatggttcaaataggtctatttctgaa |
120 |
Q |
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| T |
10464141 |
tgcaattaaagtcctactattttcatggtccaaatgggtctgtttctgaa |
10464092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 10475339 - 10475290
Alignment:
| Q |
71 |
tgcaattaaaggcctactcttttcatggttcaaataggtctatttctgaa |
120 |
Q |
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| T |
10475339 |
tgcacttaaaggcctacttttttcatgattcaaatgggtctgtttctgaa |
10475290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 10519087 - 10519038
Alignment:
| Q |
71 |
tgcaattaaaggcctactcttttcatggttcaaataggtctatttctgaa |
120 |
Q |
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| T |
10519087 |
tgcagttaaaggcctacttttttcatgattcaaatgggtctgtttctgaa |
10519038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 10863683 - 10863635
Alignment:
| Q |
71 |
tgcaattaaaggcctactcttttcatggttcaaataggtctatttctga |
119 |
Q |
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| T |
10863683 |
tgcacttaaaggcctactattttcatggttcaaatgggtccgtttctga |
10863635 |
T |
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