View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6548_low_39 (Length: 227)

Name: NF6548_low_39
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6548_low_39
NF6548_low_39
[»] chr7 (20 HSPs)
chr7 (1-227)||(22879552-22879778)
chr7 (1-112)||(22804411-22804522)
chr7 (110-227)||(22813942-22814059)
chr7 (1-112)||(22814102-22814213)
chr7 (1-112)||(22839127-22839238)
chr7 (110-227)||(22829946-22830063)
chr7 (114-227)||(22888213-22888326)
chr7 (1-112)||(22888373-22888484)
chr7 (1-112)||(22893028-22893139)
chr7 (110-227)||(22808535-22808652)
chr7 (114-227)||(22874843-22874956)
chr7 (110-227)||(22892868-22892985)
chr7 (1-112)||(22808695-22808806)
chr7 (1-112)||(22875003-22875114)
chr7 (114-227)||(22804251-22804364)
chr7 (1-106)||(22830112-22830217)
chr7 (114-227)||(22838967-22839080)
chr7 (114-226)||(22897185-22897297)
chr7 (1-111)||(22897345-22897455)
chr7 (1-98)||(22912754-22912851)
[»] chr1 (2 HSPs)
chr1 (110-227)||(21151682-21151799)
chr1 (1-112)||(21151528-21151639)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22879778 - 22879552
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879778 tcatcaaaggtgttgcttcaggtgtggtttatcttcatgaaaaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 22879679  T
Q  101 tgaattcaatgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgat 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22879678 tgaattcaatgcagatcctcacaaaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggcgactaaattttctgat 22879579  T
Q  201 atattttcttttggtgcaattcttctt 227  Q
    || ||||||||||||||| ||||||||    
T  22879578 atgttttcttttggtgcatttcttctt 22879552  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22804522 - 22804411
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22804522 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 22804423  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  22804422 tgaatttaatgc 22804411  T

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Target: chr7; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 22814059 - 22813942
Alignment:
Q  110 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 209  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22814059 tgcagatcctcacacaactcatttggctggaacaattggttatcttgctcctgaacatattagaacaggtaaggccactaaattttctgatatgttttct 22813960  T
Q  210 tttggtgcaattcttctt 227  Q
    ||||||||| ||||||||    
T  22813959 tttggtgcatttcttctt 22813942  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22814213 - 22814102
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22814213 tcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttattagattc 22814114  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  22814113 tgaatttaatgc 22814102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22839238 - 22839127
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22839238 tcatcaaaggtgttgcttcaggtttggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 22839139  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  22839138 tgaatttaatgc 22839127  T

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Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 22830063 - 22829946
Alignment:
Q  110 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| | ||||||    
T  22830063 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcctgaacatattagaacaggtaaggctacaaaattttctgatgtgttttct 22829964  T
Q  210 tttggtgcaattcttctt 227  Q
    ||||||||| ||||||||    
T  22829963 tttggtgcatttcttctt 22829946  T

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Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 22888326 - 22888213
Alignment:
Q  114 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| | ||||||||||    
T  22888326 gatcctcacacaactcatttggctggaactattggttatcttgctcctgaacatattagaagaggtaaggctactaaattttctgatgtgttttcttttg 22888227  T
Q  214 gtgcaattcttctt 227  Q
    ||||| ||||||||    
T  22888226 gtgcatttcttctt 22888213  T

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Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22888484 - 22888373
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  22888484 tcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagattc 22888385  T
Q  101 tgaattcaatgc 112  Q
    || ||| |||||    
T  22888384 tggatttaatgc 22888373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22893139 - 22893028
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  22893139 tcatcaaaggtgttgcttcaggcgtggtttatcttcatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagattc 22893040  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  22893039 tgaatttaatgc 22893028  T

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Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 22808652 - 22808535
Alignment:
Q  110 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||| | ||||||    
T  22808652 tgcagatcctcacacaactcatttggttggaactattggttatcttgcccctgagcatattagaacaggtaaggctactaaattttctgatgtgttttct 22808553  T
Q  210 tttggtgcaattcttctt 227  Q
    ||||||||| ||||||||    
T  22808552 tttggtgcatttcttctt 22808535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 22874956 - 22874843
Alignment:
Q  114 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||||||||||||| | ||||||||||    
T  22874956 gatcctcacacaactcatttggctggaactattggttatcttgctccggaacatattagaactggtaaggctactaaattttctgatgtgttttcttttg 22874857  T
Q  214 gtgcaattcttctt 227  Q
    ||||| ||||||||    
T  22874856 gtgcatttcttctt 22874843  T

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Target: chr7; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 22892985 - 22892868
Alignment:
Q  110 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 209  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  22892985 tgcagatcatcacacgactcatttggctggaactattggttatcttgctccggaacatattagaacaggtaaggctactaaattttctgatgtgttttct 22892886  T
Q  210 tttggtgcaattcttctt 227  Q
    ||||||||| ||||||||    
T  22892885 tttggtgcatttcttctt 22892868  T

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Target: chr7; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22808806 - 22808695
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  22808806 tcatcaaaggtgttgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtaattcatcgagacataaaggctagtaatgtgttgttagattc 22808707  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  22808706 tgaatttaatgc 22808695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 22875114 - 22875003
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||| | |||||||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||    
T  22875114 tcatcaaaggtgttgcttcaggtttggtttatctacatgaagaatgggaaaaagttgtgattcatagagacataaaagctagtaatgtgttgttagattc 22875015  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  22875014 tgaatttaatgc 22875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 22804364 - 22804251
Alignment:
Q  114 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 213  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  22804364 gatcctcacactactcatttggttggaacttttggttatcttgctcctgatcatattagaacaggtaaggctactaaattttctgatgtgttttcttttg 22804265  T
Q  214 gtgcaattcttctt 227  Q
    ||||| ||||||||    
T  22804264 gtgcatttcttctt 22804251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22830217 - 22830112
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  22830217 tcatcaaaggtattgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtgattcatagagacataaaggctagtaatgtgttgttagattc 22830118  T
Q  101 tgaatt 106  Q
    ||||||    
T  22830117 tgaatt 22830112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 22839080 - 22838967
Alignment:
Q  114 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 213  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  22839080 gatcctcacactactcatttggttggaacttttggttatcttgctcctgatcatattagaacaggtaaggctactaaattttctgatgtgttttcttttg 22838981  T
Q  214 gtgcaattcttctt 227  Q
    ||||| ||||||||    
T  22838980 gtgcatttcttctt 22838967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 22897297 - 22897185
Alignment:
Q  114 gatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttcttttg 213  Q
    |||||||||||||||||||||| ||||||| | || ||||| || | |||||||| ||||||||||||||| ||||||||||||||| | ||||||||||    
T  22897297 gatcctcacacaactcatttggttggaactgtagggtatctagcacctgaacatactagaacaggtaaggctactaaattttctgatgtgttttcttttg 22897198  T
Q  214 gtgcaattcttct 226  Q
    ||||| |||||||    
T  22897197 gtgcatttcttct 22897185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22897455 - 22897345
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||  | | || ||||||| ||||||||||||||| | ||||| || |||||||||||||| ||||| |||||||| ||||||      
T  22897455 tcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatgg 22897356  T
Q  101 tgaattcaatg 111  Q
    |||||| ||||    
T  22897355 tgaattgaatg 22897345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 22912851 - 22912754
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagat 98  Q
    |||| |||||||||||||| | | || ||||| | || |||||||||||  |||||||||| ||||||||||| |||||||||||||| || ||||||    
T  22912851 tcattaaaggtgttgcttctggtttgttttatttacatgaagaatgggaacaagttgttattcatagagacattaaagctagtaatgttttattagat 22912754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 21151682 - 21151799
Alignment:
Q  110 tgcagatcctcacacaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggccactaaattttctgatatattttct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||| | ||||||    
T  21151682 tgcagatcctcacacaactcatttggctggaactattggttatcttgctccggaacatattagaacaggtaaggctactaaatcttctgatgtgttttct 21151781  T
Q  210 tttggtgcaattcttctt 227  Q
    ||||||||| ||||||||    
T  21151782 tttggtgcatttcttctt 21151799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21151528 - 21151639
Alignment:
Q  1 tcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagattc 100  Q
    ||||||||||||||||||||  |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21151528 tcatcaaaggtgttgcttcaagtgtggtttatctacatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagattc 21151627  T
Q  101 tgaattcaatgc 112  Q
    |||||| |||||    
T  21151628 tgaatttaatgc 21151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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