View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6548_low_9 (Length: 435)

Name: NF6548_low_9
Description: NF6548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6548_low_9
NF6548_low_9
[»] chr6 (3 HSPs)
chr6 (67-419)||(7367875-7368243)
chr6 (65-104)||(21686122-21686161)
chr6 (67-96)||(23158117-23158146)
[»] chr7 (5 HSPs)
chr7 (64-285)||(45623318-45623547)
chr7 (104-403)||(26643086-26643383)
chr7 (296-419)||(45623596-45623720)
chr7 (11-86)||(45621378-45621453)
chr7 (66-104)||(10209945-10209983)
[»] chr4 (3 HSPs)
chr4 (104-403)||(51033011-51033305)
chr4 (66-96)||(581741-581771)
chr4 (64-96)||(52390088-52390120)
[»] chr3 (5 HSPs)
chr3 (104-287)||(53161486-53161668)
chr3 (304-419)||(53161314-53161430)
chr3 (104-145)||(6077240-6077281)
chr3 (66-101)||(23217929-23217964)
chr3 (64-104)||(18983758-18983799)
[»] chr2 (3 HSPs)
chr2 (104-402)||(39905026-39905329)
chr2 (67-104)||(23463756-23463793)
chr2 (64-104)||(25423774-25423815)
[»] scaffold0164 (1 HSPs)
scaffold0164 (67-104)||(33879-33916)
[»] chr8 (2 HSPs)
chr8 (64-93)||(29642468-29642497)
chr8 (64-104)||(29781131-29781171)
[»] chr5 (1 HSPs)
chr5 (67-104)||(19832214-19832251)
[»] chr1 (1 HSPs)
chr1 (66-102)||(22048933-22048969)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 67 - 419
Target Start/End: Original strand, 7367875 - 7368243
Alignment:
Q  67 atctatacctattaataaagacaatactttcttttggt---------tttctttcctattttacccctagttaattgcaaatattccaaaaacaaataaa 157  Q
    |||||||||||||||||||| ||||||||||||||| |         |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7367875 atctatacctattaataaaggcaatactttcttttgttgtagcctattttctttcctattttacccctaattaattgcaaatattccaaaaacaaataaa 7367974  T
Q  158 ctgtttgaagtgaagttggttaccgaaattcaaaataaaatgtaacttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccatta 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  7367975 ctgtttgaagtgaagttggttaccgaaattcaaaataaaatgtaacttcttcttttttgataaaaa--caaatgtaacttcttctgcctcttttccatta 7368072  T
Q  258 caagcttcgattacaatttcaccatctaccnnnnnnnn---------attactcccatttctttccattgatattcttaacatgaaatgaggtgggctat 348  Q
    ||||||||||||||||||||||||||||||                 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  7368073 caagcttcgattacaatttcaccatctaccttttttattttatttttattactaccatttctttccattgatattctcaacatgaaatgaggtgggctat 7368172  T
Q  349 ttaaattaattcattccttaatcctttcttcttataattgtatacaaatatcttatatggaaagggataac 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368173 ttaaattaattcattccttaatcctttcttcttataattgtatacaaatatcttatatggaaagggataac 7368243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 21686161 - 21686122
Alignment:
Q  65 taatctatacctattaataaagacaatactttcttttggt 104  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  21686161 taatctatacctattaataaaggcaatacttttttttggt 21686122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 23158117 - 23158146
Alignment:
Q  67 atctatacctattaataaagacaatacttt 96  Q
    ||||||||||||||||||||||||||||||    
T  23158117 atctatacctattaataaagacaatacttt 23158146  T

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Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 64 - 285
Target Start/End: Original strand, 45623318 - 45623547
Alignment:
Q  64 ttaatctatacctattaataaagacaatactttcttttggt---------tttctttcctattttacccctagttaattgcaaatattccaaaaacaaat 154  Q
    ||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  45623318 ttaatctatacctattaataaaggcaatactttcttttggtgtagcctattttctttcctattttacccctaattaattgcaaatattccaaagacaaat 45623417  T
Q  155 aaactgtttgaagtgaagttggttaccgaaattcaaaat-aaaatgtaacttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttcc 253  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  45623418 aaactgtttgaagtgaagttggttaccgaaattcaaaataaaaatgtaacttcttcttttttgat--aaaaacaaatgtaacttcttctgcctcttttcc 45623515  T
Q  254 attacaagcttcgattacaatttcaccatcta 285  Q
    |||||||  |||||||||||||||||| ||||    
T  45623516 attacaactttcgattacaatttcaccttcta 45623547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 104 - 403
Target Start/End: Original strand, 26643086 - 26643383
Alignment:
Q  104 ttttctttcctattttacccctagttaattgcaaatattccaaaaacaaataaactgtttgaagtgaagttggttaccgaaattcaaaataaaatg-taa 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |  ||||| |||||||||||||||||||||  |||||||||||||||   |||    
T  26643086 ttttctttcctattttacccctaattaattgcaaatattccaaaaata--taaaccgtttgaagtgaagttggttacgaaaattcaaaataaaaacctaa 26643183  T
Q  203 cttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn-attact 301  Q
    ||||||||||   |||       ||||||||||||||||| | ||||||||||||||| ||||| ||||||||||| | ||||||         ||||||    
T  26643184 cttcttcttt---gataaaaa--caaatgtaacttcttctacgtcttttccattacaaccttcggttacaatttcatcttctaccatttttttcattact 26643278  T
Q  302 cccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttctt---ataattgtatacaaata 398  Q
     |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  26643279 accatttctttccatcgatattctcaacatgaaatgaggtgggccatttaaattaattcattccttaatcctttcttcttataataattgtatacaaata 26643378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 296 - 419
Target Start/End: Original strand, 45623596 - 45623720
Alignment:
Q  296 attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaa 395  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45623596 attactaccatttctttccattcatattctcaacatgaaatgaggtgggctatttaaattaattcattctttaatcctttcttcttataattgtatacaa 45623695  T
Q  396 atatcttat-atggaaagggataac 419  Q
    ||||||||| |||||||| ||||||    
T  45623696 atatcttataatggaaagagataac 45623720  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 45621378 - 45621453
Alignment:
Q  11 cacagatgactaactagtagtaatagtaaatgggtaatcgagataaaatgcagttaatctatacctattaataaag 86  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  45621378 cacagatgactaactagtagtaatagtaacagggtaatcgagataaaacgcagttaatctatacctattaataaag 45621453  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 10209983 - 10209945
Alignment:
Q  66 aatctatacctattaataaagacaatactttcttttggt 104  Q
    |||||||||||||||||| || |||||||||||||||||    
T  10209983 aatctatacctattaatatagccaatactttcttttggt 10209945  T

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Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 104 - 403
Target Start/End: Complemental strand, 51033305 - 51033011
Alignment:
Q  104 ttttctttcctattttacccctagttaattgcaaatattccaaaaacaaataaactgtttgaagtgaagttggttaccgaaattcaaaataaaat-gtaa 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||||  ||||| |||||||||  ||||    
T  51033305 ttttctttcctattttacccctaattaattgcaaatattccaaaaata--taaactgtttgaagtgaagttggttacgaaaattgaaaataaaaacgtaa 51033208  T
Q  203 cttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn-attact 301  Q
    | ||||||||   |||       ||||||||||||||||| |||||||||||||| || ||||| ||||||||||| | ||||||         ||||||    
T  51033207 catcttcttt---gataaaaa--caaatgtaacttcttctacctcttttccattataaccttcggttacaatttcatcttctaccatttttttcattact 51033113  T
Q  302 cccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatct 401  Q
     ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51033112 accatttctttccattgatattctcaacatgaaatgaggtggaccatttaaattaattcattccttaatcctttcttcttataattgtatagaaatatct 51033013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 581741 - 581771
Alignment:
Q  66 aatctatacctattaataaagacaatacttt 96  Q
    |||||||||||||||||||||||||||||||    
T  581741 aatctatacctattaataaagacaatacttt 581771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 52390120 - 52390088
Alignment:
Q  64 ttaatctatacctattaataaagacaatacttt 96  Q
    ||||||||||||||||||||||| |||||||||    
T  52390120 ttaatctatacctattaataaaggcaatacttt 52390088  T

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Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 104 - 287
Target Start/End: Complemental strand, 53161668 - 53161486
Alignment:
Q  104 ttttctttcctattttacccctagttaattgcaaatattccaaaaacaaataaactgtttgaagtgaagttggttaccgaaattcaaaat-aaaatgtaa 202  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||    
T  53161668 ttttctttcctattttacccctaattaattgcaaatattccaaaaacaaataaactgtttgaagtgaagttagttaccgaaattcaaaataaaaatataa 53161569  T
Q  203 cttcttcttttttgatnnnnnnncaaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctacc 287  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  53161568 cttcttcttttttgat--aaaaacaaatgtaacttcttctgcctcttttccattacaaccttcgattacaatttcaccttctacc 53161486  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 53161430 - 53161314
Alignment:
Q  304 catttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 403  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53161430 catttctttccattgatattctcaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta 53161331  T
Q  404 t-atggaaagggataac 419  Q
    | |||||||| ||||||    
T  53161330 taatggaaagagataac 53161314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 6077240 - 6077281
Alignment:
Q  104 ttttctttcctattttacccctagttaattgcaaatattcca 145  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  6077240 ttttatttcctattttacccctaattaattgcaaatattcca 6077281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 23217929 - 23217964
Alignment:
Q  66 aatctatacctattaataaagacaatactttctttt 101  Q
    ||||||||||||||||||||||||||||||| ||||    
T  23217929 aatctatacctattaataaagacaatactttttttt 23217964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 18983758 - 18983799
Alignment:
Q  64 ttaatctatacctattaataaagacaatac-tttcttttggt 104  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  18983758 ttaatctatacctattaataaaggcaatacttttcttttggt 18983799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 402
Target Start/End: Original strand, 39905026 - 39905329
Alignment:
Q  104 ttttctttcctattttacccctagttaattgcaaatattccaaaaacaaa----taaactgtttgaagtgaagttggttaccgaaattcaaaataaaa-t 198  Q
    ||||| ||||||||||| ||||| ||||||| ||||||||  |||| |||    |||||||||||||||||||||||||| | |||||||||| |||| |    
T  39905026 ttttcattcctattttatccctaattaattgtaaatattcggaaaaaaaaaatataaactgtttgaagtgaagttggttagcaaaattcaaaacaaaaat 39905125  T
Q  199 gtaacttcttcttt-tttgatnnnnnnn--caaatgtaacttcttctgcctcttttccattacaagcttcgattacaatttcaccatctaccnnnnnnnn 295  Q
    |||||||||||||| ||||||         ||||||||||||||||| | | |||||| |||||| ||||| ||||||||| ||  ||||||            
T  39905126 gtaacttcttctttatttgataaaaacaaacaaatgtaacttcttctactt-ttttcctttacaaccttcggttacaattttacgttctaccattttttc 39905224  T
Q  296 -attactcccatttctttccattgatattcttaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtataca 394  Q
     |||||| ||||| ||||||||||||||||| ||||||||||||||| ||  || ||||||||||||||||||||||||||||||||   ||||||| ||    
T  39905225 cattactaccattgctttccattgatattctcaacatgaaatgaggtaggtcatataaattaattcattccttaatcctttcttctt---attgtatcca 39905321  T
Q  395 aatatctt 402  Q
    ||||||||    
T  39905322 aatatctt 39905329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 23463793 - 23463756
Alignment:
Q  67 atctatacctattaataaagacaatactttcttttggt 104  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  23463793 atctatacctattaataaaggcaatactttgttttggt 23463756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 25423815 - 25423774
Alignment:
Q  64 ttaatctatacctattaataaagacaatac-tttcttttggt 104  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  25423815 ttaatctatacctattaataaaggcaatacttttcttttggt 25423774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 33916 - 33879
Alignment:
Q  67 atctatacctattaataaagacaatactttcttttggt 104  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  33916 atctatacctattaataaaggcaatacttgcttttggt 33879  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 29642497 - 29642468
Alignment:
Q  64 ttaatctatacctattaataaagacaatac 93  Q
    ||||||||||||||||||||||||||||||    
T  29642497 ttaatctatacctattaataaagacaatac 29642468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 29781131 - 29781171
Alignment:
Q  64 ttaatctatacctattaataaagacaatactttcttttggt 104  Q
    ||||||||||||||||||||||| ||||||| | |||||||    
T  29781131 ttaatctatacctattaataaaggcaatactattttttggt 29781171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 19832214 - 19832251
Alignment:
Q  67 atctatacctattaataaagacaatactttcttttggt 104  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  19832214 atctatacctattaataaaggcaatacttttttttggt 19832251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 22048969 - 22048933
Alignment:
Q  66 aatctatacctattaataaagacaatactttcttttg 102  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  22048969 aatctatacctattaataaaggcaatacttttttttg 22048933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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