View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6549_high_1 (Length: 306)
Name: NF6549_high_1
Description: NF6549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6549_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 39522146 - 39521870
Alignment:
| Q |
11 |
atcatcaatttcataacttnnnnnnnntcatcaaacaaacacaattttcctctctcactatgtcaacctttcacttccacacaattcaacgctctatctt |
110 |
Q |
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| T |
39522146 |
atcatcaatttcataacttaaaaaaaatcatcaaacaaacacaattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctt |
39522047 |
T |
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| Q |
111 |
tctacttgcnnnnnnncttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcggatgtcgac |
210 |
Q |
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| T |
39522046 |
tctccttgctttttttcttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgac |
39521947 |
T |
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| Q |
211 |
gtggatgaaaataacaaccattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactc |
287 |
Q |
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| T |
39521946 |
gtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactc |
39521870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 127 - 281
Target Start/End: Complemental strand, 39576675 - 39576521
Alignment:
| Q |
127 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcggatgtcgacgtggatgaaaataaca |
226 |
Q |
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| T |
39576675 |
cttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataaga |
39576576 |
T |
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| Q |
227 |
accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaag |
281 |
Q |
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| T |
39576575 |
atctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaag |
39576521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 39544820 - 39544682
Alignment:
| Q |
127 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcggatgtcgacgtggatgaaaataaca |
226 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||| |||||||||||| |
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| T |
39544820 |
cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaataaca |
39544721 |
T |
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| Q |
227 |
accattatattggtgaatcaaaccatgcttacccgaaaa |
265 |
Q |
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| T |
39544720 |
acctttatattggtgaatcaaaccctacttacccaaaaa |
39544682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 39581216 - 39581075
Alignment:
| Q |
127 |
cttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcggatgtcgacgtggatgaaaata |
223 |
Q |
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||||||||||||||||||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| ||||| ||| | || || ||||| || |
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| T |
39581216 |
cttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttactgaaagta |
39581117 |
T |
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| Q |
224 |
acaaccattatattggtgaatcaaaccatgcttacccgaaaa |
265 |
Q |
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| T |
39581116 |
acaacgtttatattggtgaatcaaaccctacttatccgaaaa |
39581075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 39525529 - 39525457
Alignment:
| Q |
128 |
ttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatc |
200 |
Q |
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||||||||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
39525529 |
ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatc |
39525457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 39581927 - 39581855
Alignment:
| Q |
127 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggat |
199 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| |||||||| |
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| T |
39581927 |
cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggat |
39581855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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