View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6549_low_2 (Length: 294)
Name: NF6549_low_2
Description: NF6549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6549_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 6488817 - 6488544
Alignment:
| Q |
1 |
caattatcactatataggttgctgttgatgagatcaccggccatttatggccagctctctagcaagatcataggaaataatgatatcttatcttttactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488817 |
caattatcactatataggttgctgttgatgagatcaccggccatttatggccagctctctagcaagatcataggaaataatgatatcttatcttttactt |
6488718 |
T |
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| Q |
101 |
taatattgaaaactatatattttgaggcaaaccacaatggagtaaaagaaagttaccttttgctaaatgtgatattagaaagtgaagacgtttaccttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488717 |
taatattgaaaactatatattttgaggcaaaccacaatggagtaaaagaaagttaccttttgctaaatgtgatattagaaagtgaagacgtttaccttcc |
6488618 |
T |
|
| Q |
201 |
aagctagctatgcatttctcgatttaactagttatatattctggatcttctttactctgccggccatttctagt |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6488617 |
aagctagctatgcatttctcgatttaactagttatatattctgaatcttctttactctgccggccatttctagt |
6488544 |
T |
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