View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6550_high_10 (Length: 318)

Name: NF6550_high_10
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6550_high_10
NF6550_high_10
[»] chr5 (1 HSPs)
chr5 (9-304)||(33183272-33183567)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 33183567 - 33183272
Alignment:
Q  9 gagatgaaatggaacaagttttgacatttatttgccatttgaaaccgaatttcgttgagaataagtctgatttaaaagggccatcttgtggtgagattgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33183567 gagatgaaatggaacaagttttgacatttatttgccatttgaaaccgaatttcgttgagaataagtctgatttaaaagggccatcttgtggtgagattgt 33183468  T
Q  109 aactgttccattgcatgcaacagttagagacttaaagcaaactgctgaggctgcattaagggacacatattgcatagctgaaagactcatagtgacagat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33183467 aactgttccattgcatgcaacagttagagacttaaagcaaactgctgaggctgcattaagggacacatattgcatagctgaaagactcatagtgacagat 33183368  T
Q  209 atcaaagaattgatggatgtagaagatgaagaagtgatttttggacagattgaatctggtgtgaagctttctgtaaggggaattggcattgatttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33183367 atcaaagaattgatggatgtagaagatgaagaagtgatttttggacagattgaatctggtgtgaagctttctgtaaggggaattggcattgatttg 33183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University