View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_high_22 (Length: 236)
Name: NF6550_high_22
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38645000 - 38644779
Alignment:
| Q |
1 |
agactcttcggcaacccttgtccatgagtcacatttattttgaaatgttgtccatttttgcattgttcaccatcataatcactagagaagaaatatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645000 |
agactcttcggcaacccttgtccatgagtcacatttattttgaaatgttgtccatttttgcattgttcaccatcataatcactagagaagaaatatgttg |
38644901 |
T |
|
| Q |
101 |
ccccttctttcagtaaaggaactgccactgtgactggatgtatatcagtgttggacggatcaactgatgaccattggattgtgtccttgtcttgtgcatc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38644900 |
ccccttctttcagtaaaggaactgccactgtgactggatgtatatcagtgttggacggatcaactgatgaccattggattgtgtccttgtcttgtgcatc |
38644801 |
T |
|
| Q |
201 |
atcataatcacactgtttgtat |
222 |
Q |
| |
|
|||||||||||| ||||||||| |
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|
| T |
38644800 |
atcataatcacattgtttgtat |
38644779 |
T |
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