View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_high_24 (Length: 212)
Name: NF6550_high_24
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 48832570 - 48832748
Alignment:
| Q |
16 |
aaaatagtcctacacaaatatcccaaagtagctttccactatattggcctagatgaccctgaaaaagatgctattctcaaatgggaatctttcaaaccaa |
115 |
Q |
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| T |
48832570 |
aaaatagtcctacacaaatatcccaaagtagctttccactatattggcctagatgaccctgaaaaagatgctattctcaaatgggaatctttcaaaccaa |
48832669 |
T |
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| Q |
116 |
gtgctataactatccctcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaag |
194 |
Q |
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| T |
48832670 |
gtgctataactatccctcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaag |
48832748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 48818002 - 48817850
Alignment:
| Q |
42 |
agtagctttccactatattggcctagatgaccctgaaaaagatgctattctcaaatgggaatctttcaaaccaagtgctataactatccctcgtaaagcc |
141 |
Q |
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| T |
48818002 |
agtatctttccactatattggtcttgatgaccctgaaaaagatgctattctcaaatgggaaactttgaaaccaagtgttataactatccctcgtaaagcc |
48817903 |
T |
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| Q |
142 |
tttatcattgctatcatcaatggccaaagccatgagatactaatagatttaag |
194 |
Q |
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| T |
48817902 |
tttatcattgctatcatcaatggccaaaaccatgagatactaatagatttaag |
48817850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 40844053 - 40844194
Alignment:
| Q |
56 |
atattggcctagatgaccctgaaaaagatgctattctcaaatgggaatctttcaaaccaagtgctataactatccctcgtaaagcctttatcattgctat |
155 |
Q |
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| T |
40844053 |
atattggcttagatgaccctgaaaaagatgatattctcaaatgggtatcttcgaaaccaagtgttataacaatccctcgtaaagcctttgtcattgctat |
40844152 |
T |
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| Q |
156 |
catcaat---ggccaaagccatgagatactaatagatttaag |
194 |
Q |
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| T |
40844153 |
catcaataacgtcgaaagccatgagatagtaattgatttaag |
40844194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 15827926 - 15827881
Alignment:
| Q |
39 |
caaagtagctttccactatattggcctagatgaccctgaaaaagat |
84 |
Q |
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| T |
15827926 |
caaagtagctttccactatattggcctagatgaccccgacaaagat |
15827881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 15827836 - 15827774
Alignment:
| Q |
132 |
tcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaag |
194 |
Q |
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| T |
15827836 |
tcgtaaatcctttgttattgctatcatcaatggacaaagccatgagatagtaattgatataag |
15827774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 48792454 - 48792419
Alignment:
| Q |
39 |
caaagtagctttccactatattggcctagatgaccc |
74 |
Q |
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| T |
48792454 |
caaagtagctttccactatattggccttgatgaccc |
48792419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 48792364 - 48792302
Alignment:
| Q |
132 |
tcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaag |
194 |
Q |
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||||||| | ||| || |||||||||||||||| ||||||||||||||| |||| ||| |||| |
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| T |
48792364 |
tcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataag |
48792302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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