View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6550_high_5 (Length: 416)

Name: NF6550_high_5

Description: NF6550

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6550_high_5

[»] chr7 (1 HSPs)

Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 359; E-Value: 0

Query Start/End: Original strand, 11 - 416

Target Start/End: Complemental strand, 45422132 - 45421726

Alignment:

Q	11	taggccattgctttttgtcatctctgagttgctagaatcaaacatgttggtaatgaagttaatggaaagaacaagtaaagttttgtgcctaa-gattgtt	109	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	45422132	taggccattgctttttgtcatctctgagttgctagaatcaaacatgttgctaatgaagttaatggaaagaacaagtaaagttttgtccctaaagattgtt	45422033	T

Q	110	tctaggttggatttgtgtgtacgtaaaggacaatgttaagtgatgactgaattgaggaaagaagcaataatatataagaagaatccatgtggtcatcagg	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45422032	tctaggttggatttgtgtgtacgtaaaggaaaatgttatgtgatgaatgaattgaagaaagaagcaataatatataagaagaattcatgtggtcatcagg	45421933	T

Q	210	gccacttaggtggcacatgtcaattttaattcctaggactgaccgaaataataatttaagagatactcacaaaaggtcttccacaaattaatatgtattg	309	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45421932	gccacttaggtggcacatgtcaattttaattcctaggactgaccgaaataataatttaagagatactcacaaaaggtcttccacaaattaatatgtattg	45421833	T

Q	310	gactgctcttatttgtcattttgtcttgatattgattttttagtatcaagagaggatgtggatcctcattcaccaccacttttttattgtacgttctttt	409	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	45421832	gactgctcttatttgtcattttgtattgatattgattttttggtatcaagagaggatgtggatcctcattcaccaccacttttttattgtacattctttt	45421733	T

Q	410	ctcgcat	416	Q
		\|\|\|\|\|\|\|
T	45421732	ctcgcat	45421726	T

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