View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6550_low_10 (Length: 333)
Name: NF6550_low_10
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 39088343 - 39088032
Alignment:
| Q |
1 |
cctggtcccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgacgcagcattgttcaccaacatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39088343 |
cctggtcccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgcggcagcattgttcaccaacatgc |
39088244 |
T |
|
| Q |
101 |
taaccttttcttgcaatgtcaatcttccaatgaggtcattcacccttgttggtataggcagtgatgccttgcaaaatggaaagttatttgtggaggtgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39088243 |
taaccttttcttgcaatgtcaatcttccaatgaggtcattcacccttgttggtataggcagtgatgccttgcaaaatggaaagttatttgtggaggtgtt |
39088144 |
T |
|
| Q |
201 |
ttttaggtcacatgcaaaagggtcacgtgcttcactactcattaagagaaggagaaatgcaatggtgatgaggatcgaatccattttggaaagacaagaa |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39088143 |
ttttgggtcacatgcaaaagggtcacgtgcttcactactcattaagagaaggagaaatacaatggtgatgaggatcgaatccattttggaaagacaagaa |
39088044 |
T |
|
| Q |
301 |
aatgaatgtata |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39088043 |
aatgaatgtata |
39088032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 44721007 - 44721149
Alignment:
| Q |
1 |
cctggtcccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgacgcagcattgttcaccaacatgc |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| |||||||||||||||| ||| || || || || ||||||| || |||||| ||||| |||| |
|
|
| T |
44721007 |
cctggacccacatttgaaacaccatgaagtgcctccgaccaccactcatagcttttcattccgactctaggaaccgccggagcattattcactaacagat |
44721106 |
T |
|
| Q |
101 |
taaccttttcttgcaatgtcaatcttccaatgaggtcattcac |
143 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
44721107 |
taaccttctcttgcattgttaatcttccaatgagatccttcac |
44721149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University