View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_14 (Length: 303)
Name: NF6550_low_14
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 31852697 - 31852973
Alignment:
| Q |
17 |
aagaatatatcatttgctcgtgacattgcaatatacaacatttcca-tatcatgctaaaggtgataattttcatcaggttaatgaagctaatcttgtggt |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852697 |
aagaatatatcatttgctcgtgacattgtcatatacaacatgtccaatatcatgctaaaggtgataattttcatcaggttaatgaagctaatcttgtggt |
31852796 |
T |
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| Q |
116 |
gaaagattcatctggcaataaggttgaagtacagtatgtggatgtggatgatgttacaacagatttaagaaaattatatgtaaaggcctatttgggattg |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852797 |
gaaagattcatcgggcaataaggttgaagtacagtatgtggatgtggatgatgttacaacagatttaagaaaattatatgtaaaggcctatttgggattg |
31852896 |
T |
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| Q |
216 |
cgtccgaaacaagccccaaaatactggcttctgtttcaagtgtcaatacctccactcggatggagcacttacttcat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852897 |
cgtccgaaacaagccccaaaatactggcttctgtttcaagtgtcaatacctccactcggatggagcacttacttcat |
31852973 |
T |
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