View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6550_low_15 (Length: 300)

Name: NF6550_low_15
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6550_low_15
NF6550_low_15
[»] chr8 (2 HSPs)
chr8 (23-295)||(11763928-11764200)
chr8 (20-82)||(11783584-11783646)
[»] chr1 (4 HSPs)
chr1 (125-161)||(781185-781221)
chr1 (181-219)||(5150961-5150999)
chr1 (234-268)||(30598203-30598237)
chr1 (126-202)||(44422668-44422744)
[»] chr3 (1 HSPs)
chr3 (117-158)||(28306118-28306159)
[»] chr2 (2 HSPs)
chr2 (237-278)||(43529774-43529815)
chr2 (126-162)||(37053563-37053599)
[»] chr6 (1 HSPs)
chr6 (126-162)||(10154190-10154226)
[»] chr4 (1 HSPs)
chr4 (240-280)||(35516978-35517018)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 11764200 - 11763928
Alignment:
Q  23 ggcaacttagcatactcagctgcatcaatgtaatcatgatcagattgttaattggtatatatagttaagttgaaaagcattaaagtaatcaatcaacaaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11764200 ggcaacttagcatactcagctgcatcaatgtaatcatgatcagattgttaattggtatatatagttaagttgaaaagcattcaagtaatcaatcaacaaa 11764101  T
Q  123 tagtaaaataaactgaaactgttttcatataagttataaggtatttctataccgtattatgaagagcttataaaaataagttgaaaaataacttatgagc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11764100 tagtaaaataaactgaaactgttttcatataagttataaggtatttccataccgtattatgaagtgcttataaaaataagttgaaaaataacttatgagc 11764001  T
Q  223 atgtcataagttatttataccaatagattagttcaaataagtcaatttaaacagacacataatcttacctatg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11764000 atgtcataagttatttataccaatagattagttcaaataagtcaatttaaacagacacataatcttacctatg 11763928  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 11783646 - 11783584
Alignment:
Q  20 aacggcaacttagcatactcagctgcatcaatgtaatcatgatcagattgttaattggtatat 82  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  11783646 aacggtaacttagcatactcagctgcaacaaagtaatcatgatcagattgttaattggtatat 11783584  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 781221 - 781185
Alignment:
Q  125 gtaaaataaactgaaactgttttcatataagttataa 161  Q
    |||||||||| ||||||||||||||||||||||||||    
T  781221 gtaaaataaagtgaaactgttttcatataagttataa 781185  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 5150961 - 5150999
Alignment:
Q  181 atgaagagcttataaaaataagttgaaaaataacttatg 219  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  5150961 atgaagagcttatagaaataagttgaaaaaaaacttatg 5150999  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 30598237 - 30598203
Alignment:
Q  234 tatttataccaatagattagttcaaataagtcaat 268  Q
    ||||||||||||||||| |||||||||||||||||    
T  30598237 tatttataccaatagataagttcaaataagtcaat 30598203  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 44422668 - 44422744
Alignment:
Q  126 taaaataaactgaaactgttttcatataagttataaggtatttctataccgtattatgaagagcttataaaaataag 202  Q
    |||||||| || |||||||||||||||||| |||||| ||||| ||||   |||  || ||||||||| ||||||||    
T  44422668 taaaataatctcaaactgttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataag 44422744  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 28306118 - 28306159
Alignment:
Q  117 aacaaatagtaaaataaactgaaactgttttcatataagtta 158  Q
    |||||| ||||||||||| | |||||||||||||||||||||    
T  28306118 aacaaaaagtaaaataaagtcaaactgttttcatataagtta 28306159  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 43529815 - 43529774
Alignment:
Q  237 ttataccaatagattagttcaaataagtcaatttaaacagac 278  Q
    |||||||||||||| || ||||||||||||||| ||||||||    
T  43529815 ttataccaatagataagctcaaataagtcaattcaaacagac 43529774  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 37053563 - 37053599
Alignment:
Q  126 taaaataaactgaaactgttttcatataagttataag 162  Q
    ||||||||| | |||||||||||||||||||||||||    
T  37053563 taaaataaagtcaaactgttttcatataagttataag 37053599  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 10154190 - 10154226
Alignment:
Q  126 taaaataaactgaaactgttttcatataagttataag 162  Q
    ||||||||| | |||||||||||||||||||||||||    
T  10154190 taaaataaagtcaaactgttttcatataagttataag 10154226  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 35517018 - 35516978
Alignment:
Q  240 taccaatagattagttcaaataagtcaatttaaacagacac 280  Q
    |||||||||||||| |||||||||||||| |||||| ||||    
T  35517018 taccaatagattagctcaaataagtcaatctaaacatacac 35516978  T

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