View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_2 (Length: 512)
Name: NF6550_low_2
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 4870166 - 4869771
Alignment:
| Q |
13 |
aaaattaaacattaactaacttacttttctgagatattgtggctactactgccccgtctttcctttgggtgatagaaagtgtgttgtttacacacnnnnn |
112 |
Q |
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| T |
4870166 |
aaaattaaacattaactaacttacttttctgagatattgtggctactactgccccgtctttcctttgggtgatagaaagtgtgttgtttacacatacaaa |
4870067 |
T |
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| Q |
113 |
nnnnn-gggttacttgttggaaaaattagatatagaattatta---agtactaaatcaaagagttatattagcacaaataaattgacagaaaataaaatt |
208 |
Q |
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| T |
4870066 |
aaaattgggttacttgttggaaaaattagatatagaattattattaagtaccaaatcaaagagttatattagcacaaataaattgacagtaaataaaatt |
4869967 |
T |
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| Q |
209 |
aaataaagtgcaagaaaacttatcgaactgaggtgtgaaaaagcattgagataagcgtatttagccaccac-aattcaattatcttgtgcagtctcatag |
307 |
Q |
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| T |
4869966 |
aaataaagtgcaagaaaacttatcgaactgaggtgtgaaaaagcattgagataagcgtatttagccaccacaaattcaattatcttgtgcagtctcatag |
4869867 |
T |
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| Q |
308 |
ctagcacatggtacaacatcgcacatgaattaacaagatatcataaacaaccaaaatatatgtgaggaatgtacatgattaagaagaatgatttgc |
403 |
Q |
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| T |
4869866 |
ctagcacatggtacaacatcgcacatgaattaacaagatatcataaacaaccaaaatatatgtgaggaatgtacatgattaagaagaatgatttgc |
4869771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 41824854 - 41824927
Alignment:
| Q |
125 |
ttgttggaaaaattagatatagaattat---taagtactaaatcaaagagttatattagcacaaataaattgac |
195 |
Q |
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| T |
41824854 |
ttgttggaaaaattagacatagaattatcactaagtaataaatcaaagagaaatattaacacacataaattgac |
41824927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 36795117 - 36795073
Alignment:
| Q |
151 |
attaagtactaaatcaaagagttatattagcacaaataaattgac |
195 |
Q |
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| T |
36795117 |
attaagtagtaaatcaaagagaaatattagcacaagtaaattgac |
36795073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 16196617 - 16196683
Alignment:
| Q |
132 |
aaaaattagatatagaattatt---aagtactaaatcaaagagttatattagcacaaataaattgac |
195 |
Q |
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| T |
16196617 |
aaaaattagatatagaattattataaagtaataaatcaaagataaatactagcataaataaattgac |
16196683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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