View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6550_low_25 (Length: 232)

Name: NF6550_low_25
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6550_low_25
NF6550_low_25
[»] chr7 (3 HSPs)
chr7 (18-213)||(45421347-45421541)
chr7 (125-189)||(9697844-9697908)
chr7 (131-176)||(32856876-32856921)
[»] scaffold0276 (1 HSPs)
scaffold0276 (123-175)||(1327-1379)
[»] chr5 (2 HSPs)
chr5 (125-213)||(11188635-11188723)
chr5 (131-213)||(42366959-42367041)
[»] chr4 (2 HSPs)
chr4 (125-189)||(13564221-13564285)
chr4 (123-178)||(25726260-25726315)
[»] chr3 (3 HSPs)
chr3 (133-213)||(39966035-39966115)
chr3 (126-213)||(45198752-45198839)
chr3 (133-213)||(25638350-25638430)
[»] chr8 (2 HSPs)
chr8 (125-176)||(39169551-39169602)
chr8 (125-213)||(16449154-16449242)
[»] chr6 (3 HSPs)
chr6 (178-213)||(31642884-31642919)
chr6 (125-213)||(3795727-3795815)
chr6 (125-213)||(34432750-34432838)
[»] chr1 (3 HSPs)
chr1 (131-213)||(14321385-14321467)
chr1 (131-176)||(15775805-15775850)
chr1 (125-213)||(11215030-11215118)
[»] chr2 (1 HSPs)
chr2 (125-213)||(41566791-41566879)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 45421541 - 45421347
Alignment:
Q  18 aaagtggtatacaatatattaattagtgagtgtacaattcagaaaataaaatcaattaaacattaaaaattgaacgtggtattatttaagatannnnnnn 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||           
T  45421541 aaagtggtatacaatatattaattagagagtgtacaattcagaaaataaaatcaattaagcattaaaaattgaacgtggtattatttaagata-cttttt 45421443  T
Q  118 ncttcaatagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
     |||||||||   ||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||    
T  45421442 tcttcaatagtttagtggttagagctcgcataattaaattgtttagaagttgagtgtctgatattcgaaccccaacctctgcatatattatgcaat 45421347  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 9697844 - 9697908
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacct 189  Q
    ||||| |||||||||||||| || ||||||||||| ||||||| |||||||| || || ||||||    
T  9697844 tagcctagtggctagagctcacacaattaaattgtgtagaagtggagtgtctgatgttcgaacct 9697908  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 32856876 - 32856921
Alignment:
Q  131 agtggctagagctcgcataattaaattgtttagaagttgagtgtct 176  Q
    |||||||||||||| ||||||||||||||  |||||| ||||||||    
T  32856876 agtggctagagctcacataattaaattgtggagaagtggagtgtct 32856921  T

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Target: scaffold0276 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 1379 - 1327
Alignment:
Q  123 aatagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtc 175  Q
    ||||||| |||||||||||||| ||||||||||||||  |||||| |||||||    
T  1379 aatagcctagtggctagagctcacataattaaattgtggagaagtggagtgtc 1327  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 11188635 - 11188723
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| |||||||||||||| || |||||||||||  |||||||||||||||    |||||||| || || || |||||| ||||||||    
T  11188635 tagcctagtggctagagctcacacaattaaattgtggagaagttgagtgtctggggtttgaaccccagcccctgcatataatatgcaat 11188723  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 42367041 - 42366959
Alignment:
Q  131 agtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| ||||||||  | |||| ||||||  ||||||||||||||    |||||||||||||||||||||||||  |||||||    
T  42367041 agtggttagagctcatacaatttaattgtggagaagttgagtgtccggaatttgaacctcaacctctacatataaaatgcaat 42366959  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 13564221 - 13564285
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacct 189  Q
    ||||| |||||||||||||| || ||||||||||| ||||||| |||||||| || || ||||||    
T  13564221 tagcctagtggctagagctcacacaattaaattgtgtagaagtggagtgtctgatgttcgaacct 13564285  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 25726260 - 25726315
Alignment:
Q  123 aatagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaa 178  Q
    ||||||| ||||| ||||||||||| |||||||||||  |||||| ||||||||||    
T  25726260 aatagcctagtggttagagctcgcacaattaaattgtggagaagtggagtgtctaa 25726315  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 39966035 - 39966115
Alignment:
Q  133 tggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    |||||||||||| || |||||||||||  |||||| |||||||| |  || ||||||||||| || |||||| ||||||||    
T  39966035 tggctagagctcacacaattaaattgtggagaagtggagtgtctgaggttcgaacctcaacccctgcatataatatgcaat 39966115  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 45198839 - 45198752
Alignment:
Q  126 agccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    |||| |||||||||||||| || |||| ||||||  |||||| |||||||| |  || |||||||| || ||||||||| ||||||||    
T  45198839 agcctagtggctagagctcacacaatttaattgtggagaagtagagtgtctgaggttcgaacctcagcccctacatataatatgcaat 45198752  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 25638350 - 25638430
Alignment:
Q  133 tggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    |||||||||||| || |||| ||||||  ||||||||||||||   | || ||||||| ||| ||||||||| ||||||||    
T  25638350 tggctagagctcacacaatttaattgtagagaagttgagtgtccggtgttcgaacctcgacccctacatataatatgcaat 25638430  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 39169602 - 39169551
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtct 176  Q
    ||||| |||||||||||||| || |||||||||||  |||||||||||||||    
T  39169602 tagcctagtggctagagctcacacaattaaattgtggagaagttgagtgtct 39169551  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 16449242 - 16449154
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| |||||||||||||| || |||||||||||  |||||| ||||||||    || ||||| ||||| || |||||| ||||||||    
T  16449242 tagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaaccccaacccctgcatataatatgcaat 16449154  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 31642919 - 31642884
Alignment:
Q  178 atatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31642919 atatttgaacctcaaccactacatatattatgcaat 31642884  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 3795727 - 3795815
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| |||||||||||||| || |||||||||||  |||||| |||||||| |  || ||||| || || || |||||| ||||||||    
T  3795727 tagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctgaggttcgaaccccagcccctgcatataatatgcaat 3795815  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 34432750 - 34432838
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| ||||| ||||| || ||||||||||||||  |||||| ||||||||    || ||||| |||||||| |||||| ||||||||    
T  34432750 tagcctagtggttagagttcacataattaaattgtggagaagtggagtgtctggggttcgaaccccaacctctgcatataatatgcaat 34432838  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 14321385 - 14321467
Alignment:
Q  131 agtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    |||||||| |||||||| |||||||||||  |||||| |||||| |    |||||||| |||| |||||||||| ||||||||    
T  14321385 agtggctaaagctcgcacaattaaattgtggagaagtggagtgtttggggtttgaaccccaacttctacatataatatgcaat 14321467  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 15775850 - 15775805
Alignment:
Q  131 agtggctagagctcgcataattaaattgtttagaagttgagtgtct 176  Q
    |||||||||||||| || |||| |||||| ||||||||||||||||    
T  15775850 agtggctagagctcacacaatttaattgtgtagaagttgagtgtct 15775805  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 11215118 - 11215030
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| |||||||||||||| || |||||||||||  |||||| ||||||||    || |||||||| || || |||||| ||||||||    
T  11215118 tagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctggggttcgaacctcagcccctgcatataatatgcaat 11215030  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 41566879 - 41566791
Alignment:
Q  125 tagccaagtggctagagctcgcataattaaattgtttagaagttgagtgtctaatatttgaacctcaacctctacatatattatgcaat 213  Q
    ||||| |||||||||||||| || |||||||||||  |||||| ||||||||   ||| ||||  ||||| || |||||| ||||||||    
T  41566879 tagcctagtggctagagctcacacaattaaattgtggagaagtggagtgtctgggattcgaactccaacccctgcatataatatgcaat 41566791  T

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