View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_3 (Length: 489)
Name: NF6550_low_3
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 6 - 471
Target Start/End: Original strand, 3432946 - 3433411
Alignment:
| Q |
6 |
agtgttttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagt |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432946 |
agtgttttccatatagaccaaaacctatcaatatttgaatggtgagagaaaaaaataggatctcttgcagctgaatagaaatctcccatgtcttcaaagt |
3433045 |
T |
|
| Q |
106 |
taggttgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagg |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433046 |
taggttgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagg |
3433145 |
T |
|
| Q |
206 |
gtttccgaggaaaagtcttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcg |
305 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433146 |
gtttccgaggaaaagtgttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcg |
3433245 |
T |
|
| Q |
306 |
ctatcatcgccaggtacatagttaaagtctatgagtgttggaggttgatgatttgcatttcggagttcatcgtaaagaggagatgtacggtcggtgtaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433246 |
ctatcatcgccaggtacatagttaaagtctatgagtgttggaggttgatgatttgcatttcggagttcatcgtaaagaggagatgtacggtcggtgtaaa |
3433345 |
T |
|
| Q |
406 |
tggagggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433346 |
tggagggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
3433411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 471
Target Start/End: Original strand, 3426764 - 3427220
Alignment:
| Q |
6 |
agtgttttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagt |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||| |||||||| |
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|
| T |
3426764 |
agtgttttccatacagaccaaaacctatcaatatttgaatggtgagagaaaaaaataggatctctagcagctgcatagaaagttcccatgttttcaaagt |
3426863 |
T |
|
| Q |
106 |
taggttgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagg |
205 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||| |||||||||| |||||| |||||||||||| ||||| ||| ||| || |||||||||| |
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| T |
3426864 |
taggttgcgtattatcaccactccatctatgaactggtccatgtggaacattctctatggatccagcacctggatcgggttgatcaccggcacggtaaga |
3426963 |
T |
|
| Q |
206 |
gtttccgaggaaaagtcttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcg |
305 |
Q |
| |
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| |||||||||| || |||| ||||||||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
3426964 |
gcttccgaggaatagagttgaagtttttccatttgagacaagttgtctatacattatagtaaggtttgtggagattctttcattttcatcattttcatcg |
3427063 |
T |
|
| Q |
306 |
ctatcatcgccaggtacatagttaaagtctatgagtgttggaggttgatgatttgcatttcggagttcatcgtaaagaggagatgtacggtcggtgtaaa |
405 |
Q |
| |
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||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427064 |
---tcaccgtca------tagtttaagtctatgagtgttggaggttgatgatttgcatttcggagttcatcgtaaagaggagatgtacggtcggtgtaaa |
3427154 |
T |
|
| Q |
406 |
tggagggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
471 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3427155 |
tggagggaaattgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
3427220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 471
Target Start/End: Complemental strand, 11897518 - 11897056
Alignment:
| Q |
6 |
agtgttttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |||| || |
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|
| T |
11897518 |
agtgttttccatatagaccataacctatcaatatttgaatggtgagagaaaaaaacaggatctcttgctgctgaatagaaagttcccatgttttcatggt |
11897419 |
T |
|
| Q |
106 |
taggttgcgtatcatcaccactccatagatgaactatattatgtggaacaatctctacggatccagcaccgggatccggtgcatctccagcacggtaagg |
205 |
Q |
| |
|
|||||||| || |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| | |||| || |||||||||||||||| |
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|
| T |
11897418 |
taggttgcctagtatcaccactccaattatgaactgtattatgaggaacaatctctacggatccagcacat---ttcggtacacctccagcacggtaagg |
11897322 |
T |
|
| Q |
206 |
gtttccgaggaaaagtcttgaggtttttccaccagacacaacctgtctatacattatagtaaggtttgtggagatcctttcattttcatcaacttcatcg |
305 |
Q |
| |
|
|| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||| | | ||||||| || |||||||| |
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|
| T |
11897321 |
gtatccgaggaaaagtcttgagttttttcctctagacacaacctgtctatacattatagtaaggtttgtgtggattatgttattttcaccatcttcatcg |
11897222 |
T |
|
| Q |
306 |
ctatcatcgccaggtacatagttaaagtctatgagtgttggaggttgatgatttgcatttcggagttcatcgtaaagaggagatgtacggtcggtgtaaa |
405 |
Q |
| |
|
| ||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
11897221 |
atgtcatcgcagtgaccatagttgaagtctatgagtgttggaggttgatgttttgcatttcggagtttgtcgtaaagaggagatgtagggtcggtgtaaa |
11897122 |
T |
|
| Q |
406 |
tggagggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
471 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11897121 |
tggagggaaatcgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
11897056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 11912611 - 11912455
Alignment:
| Q |
6 |
agtgttttccatatagaccaaaacctatcaatatttgaatggtgagagnnnnnnntaggatctcttgcagctgaatagaaatctcccatgtcttcaaagt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||| || |
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|
| T |
11912611 |
agtgttttccatatagaccataacctatcaatatttgaatggtgagagaaaaaaacaggatctcttgctgctgaatagaaatttcccatgttttcatggt |
11912512 |
T |
|
| Q |
106 |
taggttgcgtatcatcaccactccatagatgaactatattatgtggaacaatctcta |
162 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||| | |||||||||||||| |||||| |
|
|
| T |
11912511 |
taggttgcctattatcaccactccatgtatgaattgtattatgtggaacattctcta |
11912455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 405 - 471
Target Start/End: Complemental strand, 11912455 - 11912389
Alignment:
| Q |
405 |
atggagggaaattgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
11912455 |
atggagggaaattgcatgccattaggagcgtcaaagttccaaaatggtaaagcaaaggctggatcat |
11912389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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