View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_4 (Length: 477)
Name: NF6550_low_4
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_4 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 2 - 461
Target Start/End: Complemental strand, 10784540 - 10784070
Alignment:
| Q |
2 |
catcagaatacttattgtggttaatgaagctcaacaaaaattagttagttactcccatacaaacttactttttactta-------gtttataaagatgac |
94 |
Q |
| |
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|||||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10784540 |
catcagaacaattatagtggttaatgaagctcaacaaaaactagttagttactcccatacaaacttactttttacttattacttagtttataaagatgac |
10784441 |
T |
|
| Q |
95 |
tattgtttgcctaaccttaattttatgttatttgaagtttaaataaatgataattccttttaaaaaa---tacatttttatatcaggagtccgtatttaa |
191 |
Q |
| |
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|||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
10784440 |
tattgtaagcctaaccttgattttatgttatttgcagtttaaataaatgataattccttttaaaaaaaaatacatttttatatcaggagtccgtatataa |
10784341 |
T |
|
| Q |
192 |
tatttgagcgggatctccaatttttaatattgagctatgctagtatttggtgcaaagaaactcatgtgcaaaatt-aacgaataactagcaaccaatttt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10784340 |
tatttgagcgggatctccaatttttaatattgagctatgcta---tttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcaaccaatttt |
10784244 |
T |
|
| Q |
291 |
taatattgttgtaataaaggctaggtagaaaaaccaagagattgtgcctag----gtcgtttgctttatcgtacctcatagcattttcctttaatatttg |
386 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10784243 |
taatattgttgtaataaaggctaggta-aaaaagcaagagattgtgcctagctaggtcgtttgctttatcatacctcatagcattttcctttaatatttg |
10784145 |
T |
|
| Q |
387 |
atagttctgacaatgatcacaatttactataggaggagcaatatatcccgggcttaagcttggtaaatgagtttc |
461 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||| |
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| T |
10784144 |
atagttctgacaatgatcacaatttactacaggaggagcaacatatccaggacttaagcttggtaaatgagtttc |
10784070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 2 - 426
Target Start/End: Original strand, 50506951 - 50507383
Alignment:
| Q |
2 |
catcagaatacttattgtggttaatgaagctcaacaaaaattagttagttactcccatacaaacttactt---tttacttagtttataaagatgactatt |
98 |
Q |
| |
|
|||||||| | |||| |||||||||| | ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |
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| T |
50506951 |
catcagaacaattatagtggttaatggaactcaacaaaaattagttagttactcccgtacaaa-ttacttacttttacttagtttataaagatgactatt |
50507049 |
T |
|
| Q |
99 |
gtttgcctaaccttaattttatgttatttgaagtttaaataaatgataattccttttaaaaaataca-tttttatatcaggagtccgtatttaatatttg |
197 |
Q |
| |
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||| ||||| |||||| |||||||||||| |||||||||||||||| || ||||||||||||||| ||||| ||| |||||| |||||||||||||| |
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| T |
50507050 |
gttagcctagccttaagtttatgttatttacggtttaaataaatgatattttcttttaaaaaatacattttttttattaggagtttgtatttaatatttg |
50507149 |
T |
|
| Q |
198 |
agcgggatctccaatttttaatattgagctatgctagtatttggtgcaaagaaactcatgtgcaaaa-ttaacgaataactagcaaccaattttta---- |
292 |
Q |
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|| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | || |
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| T |
50507150 |
agttggatctccaatttttaatattgaactatgc---tatttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcaaccagtctatacgtg |
50507246 |
T |
|
| Q |
293 |
atattgttgtaataaaggctaggtagaaaaaccaagagattgtgcctaggtcgtttgc------tttatcgtacctcatagcattttcctttaatatttg |
386 |
Q |
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|| |||||| || | ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
50507247 |
at-ttgttggaa-ataggctaggt-gaaaaagcaagagattgtgcctaggtcgtttgctttttttttatcgtacctcgtagcattttcctttaatatttg |
50507343 |
T |
|
| Q |
387 |
atagttctgacaatgatcacaatttactataggaggagca |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
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| T |
50507344 |
atagttctgacaatgatcacaatttactataggaagagca |
50507383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 12704733 - 12704673
Alignment:
| Q |
26 |
tgaagctcaacaaaaattagttagttactcccatacaaacttactttttacttagtttataa |
87 |
Q |
| |
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|||| ||||||| || |||||||||| || |||||||||||||| ||||||||| ||||||| |
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| T |
12704733 |
tgaaactcaacacaagttagttagttcctaccatacaaacttac-ttttacttaatttataa |
12704673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 9206911 - 9206961
Alignment:
| Q |
18 |
gtggttaatgaagctcaacaaaaattagttagttactcccatacaaactta |
68 |
Q |
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| T |
9206911 |
gtggttagtgaagttcaacacaagttagttagttcctcccatacaaactta |
9206961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 56220830 - 56220874
Alignment:
| Q |
42 |
ttagttagttactcccatacaaacttactttttacttagtttataa |
87 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||| ||||||| |
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|
| T |
56220830 |
ttagttagttcctcccatacaaactta-tttttacttaatttataa |
56220874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8509495 - 8509446
Alignment:
| Q |
19 |
tggttaatgaagctcaacaaaaattagttagttactcccatacaaactta |
68 |
Q |
| |
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|||||| |||||||||||| | |||||||||| |||||||||||||||| |
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| T |
8509495 |
tggttagtgaagctcaacacaggttagttagtttctcccatacaaactta |
8509446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 44927 - 44891
Alignment:
| Q |
42 |
ttagttagttactcccatacaaacttactttttactt |
78 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
44927 |
ttagttagttcttcccatacaaacttactttttactt |
44891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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