View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_5 (Length: 421)
Name: NF6550_low_5
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 30295843 - 30296236
Alignment:
| Q |
13 |
catcatcagccataaactgtgtgtgtgagagagaaatgtgacaatgattttgtattgatagaagaaattagtaaaacataaagatgacacagccggccaa |
112 |
Q |
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| T |
30295843 |
catcatcagccataaactgtg--tgtgagagagaaatgtgacaatgattttgtattgatagaagaaattagtaaaacataaagatgacacagccggccaa |
30295940 |
T |
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| Q |
113 |
agcaataagatcgttcatatcaatcattctcttcacacttatatcgtgacggtgaaagctataagatagatatatttttaatttgccaatagctagtata |
212 |
Q |
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| T |
30295941 |
agcaataagatcgttcatatcaatcattctcttcacacttatatcgtgacggtgaaagctataagatagatatatttttattttgccaatagctagtata |
30296040 |
T |
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| Q |
213 |
agatatggataaagaatacattctcagatcactgttttaagcaac-----nnnnnnnnnctattgtttagaattatggagtaagcgatgtattggtctat |
307 |
Q |
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| T |
30296041 |
agatatggataaagaatacattctcagatcactgttttaagcaacaaaaaaaaaaaaaactattgtttagaattatggagtaaccgatgtattggtctat |
30296140 |
T |
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| Q |
308 |
attatatcaatcactaaatgattctnnnnnnntagtttgttgcatataatagtatgtaactagtgacaaaaataataattccttatcacctaatttt |
404 |
Q |
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| T |
30296141 |
attatatcaatcactaaatgattct-aaaaaatagtttgttgcatataatagtatgtaactagtgacaaaaataataattccttatcacctaatttt |
30296236 |
T |
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