View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_7 (Length: 365)
Name: NF6550_low_7
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 219641 - 219307
Alignment:
| Q |
20 |
ctgcctacatactgactactgctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaag |
119 |
Q |
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| T |
219641 |
ctgcctacataccgactactgctcggatgtcggggaatatcaattgtgacaaactaaattccaataatactatatatagctaaaagttaaaacttgaaag |
219542 |
T |
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| Q |
120 |
taacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtg |
219 |
Q |
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| T |
219541 |
taacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtg |
219442 |
T |
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| Q |
220 |
aaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaaca |
319 |
Q |
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| T |
219441 |
aaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaaca |
219342 |
T |
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| Q |
320 |
aaacgttgtgccaatctcttaaccccttgatgatg |
354 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
219341 |
aaacgttgtgccaatctcttaaccccttgatgatg |
219307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 164 - 354
Target Start/End: Original strand, 31651709 - 31651899
Alignment:
| Q |
164 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
263 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
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| Q |
264 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
354 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| | ||||||||| ||||||||||| |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatg |
31651899 |
T |
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