View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6550_low_9 (Length: 341)
Name: NF6550_low_9
Description: NF6550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6550_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 42 - 322
Target Start/End: Original strand, 9079489 - 9079766
Alignment:
| Q |
42 |
attctatcacaattgatgaatttgaatttataactgataacgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagta |
141 |
Q |
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| T |
9079489 |
attctatcgcaatgaatgaatttgaatttataactga---cgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagta |
9079585 |
T |
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| Q |
142 |
catgattacgatcaagaattttgatggcaacatattctccattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
241 |
Q |
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| T |
9079586 |
catgattacgatcaagaattttgatggcaacataatctccattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
9079685 |
T |
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| Q |
242 |
cagctcatacttccctactctagtacgaggtgcttgtgttaccttattactcatcatgtacaacaattctgtactttcctt |
322 |
Q |
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| T |
9079686 |
cagctcatacttccctactctagtacgtggtgcttgtgttaccttattactcatcatgtacaacaattctgtactttcctt |
9079766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 42 - 310
Target Start/End: Original strand, 9088266 - 9088531
Alignment:
| Q |
42 |
attctatcacaattgatgaatttgaatttataactgataacgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagta |
141 |
Q |
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| T |
9088266 |
attctatcgcaatgaatgaatttgaatttataactga---cgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagta |
9088362 |
T |
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| Q |
142 |
catgattacgatcaagaattttgatggcaacatattctccattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
241 |
Q |
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| T |
9088363 |
catgattacgatcaagaattttgatggcaacataatctccattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
9088462 |
T |
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| Q |
242 |
cagctcatacttccctactctagtacgaggtgcttgtgttaccttattactcatcatgtacaacaattc |
310 |
Q |
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| T |
9088463 |
catctcgtacttcccaactctagtacgaggtcttggtggtaccttattactcatcatgtacaacaattc |
9088531 |
T |
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