View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6551_high_7 (Length: 435)
Name: NF6551_high_7
Description: NF6551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6551_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 33041447 - 33041848
Alignment:
| Q |
17 |
tatgataaggaattgaattaggcaaaacaacattcggaaaaggaacacaaggtgcagttaaattgggataaggattggaaggaaaaagtgtcttcatgga |
116 |
Q |
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| T |
33041447 |
tatgataaggaattgaattaggcaaaacaacattcggaaaaggaacacgaggtgcagttaaattgggataaggattggaaggaaaaagtgtcttcatgga |
33041546 |
T |
|
| Q |
117 |
atatgtgaaatgatctagagaacaattcataaactttgtaaactttatagccacgggctgccaacaaagacgcatgagttagctctttgtgtgaatttgt |
216 |
Q |
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| T |
33041547 |
atatgtgaaatgatctagagaacaattcataaactttgtaaactttatagccacgggctgccaacaaagacgcatgagttagctctttgtgtgaatttgt |
33041646 |
T |
|
| Q |
217 |
tgcaatgtcattgaggtataatagatatgtagcacatacaaccaaaaacgttgaaatcagcgtatagaggcaatttatcaaacacaaactcaaaacgaga |
316 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041647 |
tgcaatgtcgttgaggtataatagatatgtagcacatacaaccaaaaacgtcgaaatcagcgtatagaggcaatttatcaaacacaaactcaaaacgaga |
33041746 |
T |
|
| Q |
317 |
ctttcctttgaaaacttggtaggcaagttatcttaaaacataaaggaaattgctacattcaacacgtgttgatgttttctttccacaattgaattatgtt |
416 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33041747 |
ctttcctttgaaaacttgagaggcaagttatcttaaaacataaaggacattgctacattcaacacgtgttgatgttttctttccaaaattgaattatgtt |
33041846 |
T |
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| Q |
417 |
ca |
418 |
Q |
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|| |
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| T |
33041847 |
ca |
33041848 |
T |
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