View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6551_low_1 (Length: 639)
Name: NF6551_low_1
Description: NF6551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6551_low_1 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 140 - 627
Target Start/End: Complemental strand, 8349622 - 8349135
Alignment:
| Q |
140 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaagaaataccaagactaaaattctattcataatatctatatca |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8349622 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatatattagctagaaagaaatcccaagactaaaattctattcataatatctatatca |
8349523 |
T |
|
| Q |
240 |
ctcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagca |
339 |
Q |
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| T |
8349522 |
ctcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagca |
8349423 |
T |
|
| Q |
340 |
ttcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagag |
439 |
Q |
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| T |
8349422 |
ttcaataagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagag |
8349323 |
T |
|
| Q |
440 |
cgtgtcacaaccattgatgcacattgtaccgaatcagcaacttaccgtccatgatttgctgccgaatggatnnnnnnntggaatttagatgtgcttcagc |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
8349322 |
cgtgtcacaaccattgatgcacattgtaccgaatcagcaatttaccgtccatgatttgctgccgaatggataaaaaagtggaaattagatgtgcttcagc |
8349223 |
T |
|
| Q |
540 |
agttcagctgtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
627 |
Q |
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| T |
8349222 |
agttcagctgtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
8349135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 127 - 508
Target Start/End: Original strand, 11993658 - 11994025
Alignment:
| Q |
127 |
aattgtagaaatgttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaagaaataccaagactaaaattctattcat |
226 |
Q |
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||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||| ||| |||| ||||||||||||| ||||||| |
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| T |
11993658 |
aattgtagaaatgttttagttatacacatatcaacagtggtggtaaaattgtagaaatattttagctacaaacaaatcccaagactaaaat--tattcat |
11993755 |
T |
|
| Q |
227 |
a-atatctatatcactcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatctt |
325 |
Q |
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|| || | ||||| || || |||||||| | || |||||||||||||||||||| ||| ||||| || |||||| |||| |
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| T |
11993756 |
ggatgactttctcacttagtag---tgacccac----------caaatgtaaatcacttgaactaatgtttttggaagatagtttttttaaacttctctt |
11993842 |
T |
|
| Q |
326 |
acgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttgg |
425 |
Q |
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| T |
11993843 |
acaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtacaagatggaaggttggtagtggagagaatatccgggtgttttatgacaattgg |
11993941 |
T |
|
| Q |
426 |
tt-agcaaacaagagcgtgtcacaaccattgatgcacattgtaccgaatcagcaacttaccgtccatgatttgctgccgaatgg |
508 |
Q |
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|| ||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||||| |
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| T |
11993942 |
tttagcaaacaagagcatggaacaaccattgatgcacattgtactgaatcagcaacttaaagtccgagatttgctgcagaatgg |
11994025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 44614647 - 44614593
Alignment:
| Q |
109 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
163 |
Q |
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|||||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
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| T |
44614647 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44614593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 44793922 - 44793976
Alignment:
| Q |
109 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
163 |
Q |
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|||||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
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| T |
44793922 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44793976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 27216 - 27253
Alignment:
| Q |
111 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
148 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
27216 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
27253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 171576 - 171539
Alignment:
| Q |
111 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
148 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
171576 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
171539 |
T |
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