View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6551_low_2 (Length: 624)

Name: NF6551_low_2
Description: NF6551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6551_low_2
NF6551_low_2
[»] chr4 (17 HSPs)
chr4 (18-573)||(7291471-7292022)
chr4 (178-236)||(37970177-37970235)
chr4 (178-237)||(3936626-3936685)
chr4 (189-238)||(27655729-27655778)
chr4 (193-236)||(10069106-10069149)
chr4 (178-241)||(25404654-25404717)
chr4 (189-236)||(44383448-44383495)
chr4 (178-236)||(16451209-16451267)
chr4 (189-231)||(31760251-31760293)
chr4 (181-238)||(6087745-6087802)
chr4 (189-242)||(21623433-21623486)
chr4 (181-242)||(50668334-50668395)
chr4 (178-230)||(1432862-1432914)
chr4 (178-238)||(19854563-19854623)
chr4 (181-237)||(20383487-20383543)
chr4 (176-231)||(39651666-39651722)
chr4 (190-242)||(48251923-48251975)
[»] chr1 (18 HSPs)
chr1 (502-617)||(44339563-44339678)
chr1 (527-617)||(13567985-13568074)
chr1 (178-236)||(16580802-16580860)
chr1 (190-242)||(45190284-45190336)
chr1 (181-236)||(25532973-25533028)
chr1 (193-236)||(44208796-44208839)
chr1 (189-247)||(9265850-9265908)
chr1 (178-236)||(10132447-10132505)
chr1 (176-238)||(15382820-15382882)
chr1 (190-243)||(8253732-8253785)
chr1 (192-245)||(34632160-34632213)
chr1 (189-242)||(50157816-50157869)
chr1 (184-236)||(3509950-3510002)
chr1 (178-230)||(29233977-29234029)
chr1 (181-225)||(32560984-32561028)
chr1 (189-225)||(32950775-32950811)
chr1 (178-242)||(34766854-34766918)
chr1 (178-225)||(45774585-45774633)
[»] chr6 (5 HSPs)
chr6 (178-236)||(9111047-9111105)
chr6 (189-238)||(12700435-12700484)
chr6 (178-238)||(655752-655812)
chr6 (189-236)||(34701147-34701194)
chr6 (208-236)||(7730664-7730692)
[»] chr3 (14 HSPs)
chr3 (181-242)||(25441506-25441567)
chr3 (178-237)||(13042803-13042862)
chr3 (178-237)||(13050880-13050939)
chr3 (178-236)||(7938724-7938782)
chr3 (178-235)||(38894038-38894095)
chr3 (190-238)||(25289328-25289376)
chr3 (190-242)||(38330767-38330819)
chr3 (178-238)||(39408267-39408327)
chr3 (178-238)||(53996297-53996357)
chr3 (178-236)||(1743993-1744051)
chr3 (189-242)||(31214628-31214681)
chr3 (178-231)||(52575952-52576005)
chr3 (190-242)||(6901469-6901521)
chr3 (178-242)||(19468445-19468509)
[»] chr7 (12 HSPs)
chr7 (178-236)||(9522912-9522970)
chr7 (178-225)||(37624554-37624601)
chr7 (181-236)||(39280824-39280879)
chr7 (178-236)||(7872751-7872809)
chr7 (190-236)||(27279418-27279464)
chr7 (178-236)||(41029272-41029330)
chr7 (178-230)||(5483336-5483389)
chr7 (181-242)||(7670428-7670489)
chr7 (178-231)||(44410603-44410656)
chr7 (181-237)||(30296332-30296388)
chr7 (178-233)||(36765501-36765557)
chr7 (178-233)||(36769153-36769209)
[»] chr2 (10 HSPs)
chr2 (189-235)||(29872186-29872232)
chr2 (189-236)||(26999110-26999157)
chr2 (178-236)||(25598565-25598623)
chr2 (178-231)||(34912584-34912638)
chr2 (179-236)||(13196700-13196757)
chr2 (177-238)||(18557105-18557166)
chr2 (182-238)||(833076-833132)
chr2 (179-223)||(18782544-18782588)
chr2 (189-237)||(30799102-30799150)
chr2 (193-237)||(37670499-37670543)
[»] chr8 (14 HSPs)
chr8 (189-230)||(22941198-22941239)
chr8 (181-238)||(24195247-24195304)
chr8 (190-236)||(20469326-20469372)
chr8 (181-239)||(40679735-40679793)
chr8 (190-240)||(42932243-42932293)
chr8 (182-235)||(9055412-9055465)
chr8 (190-247)||(19734304-19734361)
chr8 (181-238)||(32421567-32421624)
chr8 (181-238)||(40795375-40795432)
chr8 (178-243)||(42829478-42829543)
chr8 (189-245)||(8148441-8148497)
chr8 (178-242)||(26914074-26914138)
chr8 (181-225)||(27134426-27134470)
chr8 (189-241)||(30427726-30427778)
[»] chr5 (13 HSPs)
chr5 (178-225)||(31708149-31708196)
chr5 (178-236)||(37932330-37932388)
chr5 (181-238)||(12189990-12190047)
chr5 (193-238)||(14188353-14188398)
chr5 (181-230)||(27903119-27903168)
chr5 (190-239)||(31602840-31602889)
chr5 (181-245)||(10704337-10704401)
chr5 (181-225)||(13864355-13864399)
chr5 (178-238)||(32675296-32675356)
chr5 (185-225)||(33645699-33645739)
chr5 (178-225)||(37147000-37147048)
chr5 (190-238)||(37791178-37791226)
chr5 (192-236)||(43359090-43359134)


Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 7291471 - 7292022
Alignment:
Q  18 ataaatgaagtaaatcacgacttatagaattacatactacatacatgatagtagcaatactttcttagtcacatccctgtatataaatgaccaaaaatta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7291471 ataaatgaagtaaatcacgacttgtagaattacatactacatacatgatagtagcaatactttcttagtcacatcccggtatataaatgaccaaaaatta 7291570  T
Q  118 agttaaatgattaatgaaacaaattgtttcacaaccccatcttttttgatggtgatatgtttcgaacccccgaccttgcatatattatagattgtttata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  7291571 agttaaatgattaatgaaacaaattgtttcacaaccccatcttttttgatggtgatatgtttcgaatccccgaccttgcatatattatagattatttata 7291670  T
Q  218 ccaactgaactaagttcacaaagactttcatcccatttaagaaagaacaacggtaatagcatttcagaacttaaaagactaaatcgnnnnnnnnnnnnta 317  Q
    |||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |            ||    
T  7291671 ccaactgaactaaactcataaagactttcatcccatttaagaaaggacaacggtaatagcatttcagaacttaaaagactaaattg--aaaaaaaaaata 7291768  T
Q  318 taatgtaaaattaagttaaatgttattgaaacaattttgccattaatcacct-ccttgtgtacgcccaaatctcacgaatcttgtctaagttgtacacat 416  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||    
T  7291769 taatgtaaaattaagttaaatgttattgaatcaattttgccattaatcacctcccttgtgtacgcccaaatctcacgaatcttgtct---ttgtacacat 7291865  T
Q  417 gtttgttttgtattggttacaaacttccacgtacacactgtttctccagtgttccaaaactaccaacaaccctcttcacgacataatccagaactttcca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7291866 gtttgttttgtattggttacaaacttccacgtacacactgtttctccagtgttccaaaactaccaacaaccctcttcacgacataatccagaactttcca 7291965  T
Q  517 ttcttcatcttcatcatcagtatcacattttcaatccattgaacattgttattgttt 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7291966 ttcttcatcttcatcatcagtatcacattttcaatccattgaacattgttattgttt 7292022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 37970177 - 37970235
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||||||| || ||||||||||| ||| ||||||||||||||| |||||||||    
T  37970177 ttcgaacccccgactttacatatattatacattttttataccaactgaattaagttcac 37970235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 3936685 - 3936626
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    |||||||||| |||||||||||||||||  |||||| ||||||||||| ||||| |||||    
T  3936685 ttcgaaccccggaccttgcatatattatgcattgttcataccaactgagctaagctcaca 3936626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 27655778 - 27655729
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  27655778 gaccttgcatatattatgcattgtttctatcaactgaactaagttcacaa 27655729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 10069106 - 10069149
Alignment:
Q  193 ttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||    
T  10069106 ttgcatatattatacattgttcataccaactgagctaagttcac 10069149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 25404717 - 25404654
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaaga 241  Q
    ||||||||||||||||| ||||||||||| ||||| | ||| |||||| ||||| |||| ||||    
T  25404717 ttcgaacccccgaccttacatatattatatattgtctttactaactgatctaagctcacgaaga 25404654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 44383495 - 44383448
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  44383495 gaccttacatattttatatattgtttataccaactgagctaagttcac 44383448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 16451267 - 16451209
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||||| |||||||||||||| |||||  ||||||| ||||||||||  |||||||||    
T  16451267 ttcgaactcccgaccttgcataaattatgcattgtttgtaccaactgagttaagttcac 16451209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 31760293 - 31760251
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaag 231  Q
    |||||||||||||||||| ||||| |||||||||||| |||||    
T  31760293 gaccttgcatatattatacattgtctataccaactgagctaag 31760251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 6087802 - 6087745
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||| |||||||||||||||||  ||| | |||||||||||| ||||| ||||||    
T  6087802 gaaccccagaccttgcatatattatgcattatctataccaactgagctaagctcacaa 6087745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 21623433 - 21623486
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    |||||||||||||||||  |||||   ||||||||||||||||||||| |||||    
T  21623433 gaccttgcatatattatgcattgtccctaccaactgaactaagttcacgaagac 21623486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 50668395 - 50668334
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    |||||||  ||||| ||||||||||  |||||| |||||||||||| ||||||||| |||||    
T  50668395 gaaccccgaaccttacatatattatgtattgttcataccaactgaattaagttcacgaagac 50668334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 1432914 - 1432862
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaa 230  Q
    |||||||||| |||||||||||||||||| | ||||  |||||||||| ||||    
T  1432914 ttcgaaccccggaccttgcatatattatacactgttcttaccaactgagctaa 1432862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 19854623 - 19854563
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||| || ||||||||||||||  |||||  ||||||||||| ||||| ||||||    
T  19854623 ttcgaaccccggatcttgcatatattatgcattgtccataccaactgagctaagctcacaa 19854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 20383543 - 20383487
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    ||||||| |||||||||||||||||  |||||  ||||||||||| ||||| |||||    
T  20383543 gaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcaca 20383487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 39651722 - 39651666
Alignment:
Q  176 gtttcgaacccccgaccttgcatata-ttatagattgtttataccaactgaactaag 231  Q
    ||||||||||| |||||||||||||| ||||| ||||| |||| ||||||| |||||    
T  39651722 gtttcgaacccgcgaccttgcatatatttatacattgtctatatcaactgagctaag 39651666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 48251923 - 48251975
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||||||||||||| |||||| ||| ||||||| |||| |||| ||||||    
T  48251923 accttgcatatattatacattgttcatatcaactgagctaaattcataaagac 48251975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 502 - 617
Target Start/End: Complemental strand, 44339678 - 44339563
Alignment:
Q  502 atccagaactttccattcttcatcttcatcatcagtatcacattttcaatccattgaacattgttattgttttgtctttatcaaattcaattcaattcaa 601  Q
    ||||||||| |||  |||||||||  |||||| ||||||||||||||||||||||||  |||||| ||||||||||| ||||||||||  ||||||||||    
T  44339678 atccagaaccttcttttcttcatcggcatcataagtatcacattttcaatccattgagtattgtttttgttttgtctctatcaaattcggttcaattcaa 44339579  T
Q  602 tggcaggttcatctca 617  Q
    ||||||||||||||||    
T  44339578 tggcaggttcatctca 44339563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 527 - 617
Target Start/End: Complemental strand, 13568074 - 13567985
Alignment:
Q  527 tcatcatcagtatcacattttcaatccattgaacattgttattgttttgtctttatcaaattcaattcaattcaatggcaggttcatctca 617  Q
    |||||||||||||||| |||||||||||| ||  |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13568074 tcatcatcagtatcaccttttcaatccat-gagtattgtttttgttttgtctctatcaaattcaattcaatttaatggcaggttcatctca 13567985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 16580802 - 16580860
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| |||||||||||||||||| |||||  |||||||||||| |||| ||||    
T  16580802 ttcgaaccccagaccttgcatatattatacattgtccataccaactgaattaagctcac 16580860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 45190284 - 45190336
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||| |||||    
T  45190284 accttgcatatattatgcattgtccataccaactgaactaagttcacgaagac 45190336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 25533028 - 25532973
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||||| |||||||||||||||||  |||||  ||||||||||||||||| ||||    
T  25533028 gaaccccggaccttgcatatattatgcattgtccataccaactgaactaagctcac 25532973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 44208796 - 44208839
Alignment:
Q  193 ttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||    
T  44208796 ttgcatatattatatattgtttataccaactgagctatgttcac 44208839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 9265850 - 9265908
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaaagactttca 247  Q
    |||||||||| ||||||| |||||  |||||||||||  ||||||||||| ||||||||    
T  9265850 gaccttgcatgtattatacattgtccataccaactgagttaagttcacaatgactttca 9265908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 10132447 - 10132505
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| |||||||||||||||||  |||||   |||||||||| ||||||||||    
T  10132447 ttcgaaccccagaccttgcatatattatgcattgtccttaccaactgatctaagttcac 10132505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 15382820 - 15382882
Alignment:
Q  176 gtttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||| | |||||||||||||||||| |||||| ||| |||||||  |||| ||||||    
T  15382820 gtttcgaacctcggaccttgcatatattatacattgttcatatcaactgagttaagctcacaa 15382882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 8253785 - 8253732
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaagact 243  Q
    ||||||||||||||||  |||||  ||||||||||| ||||| |||||||||||    
T  8253785 accttgcatatattatgcattgtccataccaactgagctaagctcacaaagact 8253732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 34632213 - 34632160
Alignment:
Q  192 cttgcatatattatagattgtttataccaactgaactaagttcacaaagacttt 245  Q
    ||||||||||||||| ||||| |||||||||||| ||||| |||| | ||||||    
T  34632213 cttgcatatattatacattgtctataccaactgagctaagctcacgaggacttt 34632160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 50157816 - 50157869
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||||||||||||||||||||  | | || |||||||| ||||||||||||    
T  50157816 gaccttgcatatattatagattgtccaaatcagctgaactatgttcacaaagac 50157869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 3509950 - 3510002
Alignment:
Q  184 cccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||| |||||||||||||||||  |||||  ||||||||||| ||||||||||    
T  3509950 ccccggaccttgcatatattatgcattgtccataccaactgagctaagttcac 3510002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 29233977 - 29234029
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaa 230  Q
    |||||||||| |||||||||||| ||||  ||||| |||||||||||| ||||    
T  29233977 ttcgaaccccagaccttgcatattttatgcattgtctataccaactgagctaa 29234029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 32561028 - 32560984
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactga 225  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||    
T  32561028 gaaccccggaccttgcatatattatacattgtccataccaactga 32560984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 32950775 - 32950811
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactga 225  Q
    |||||||||||||||||  ||||||||||||||||||    
T  32950775 gaccttgcatatattatgcattgtttataccaactga 32950811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 34766918 - 34766854
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    |||||||||| |||||||||| ||||||| |||||  |||||||||||  |||| |||| |||||    
T  34766918 ttcgaaccccagaccttgcatgtattatacattgtccataccaactgagttaagctcacgaagac 34766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 45774633 - 45774585
Alignment:
Q  178 ttcgaacccccgaccttgcata-tattatagattgtttataccaactga 225  Q
    |||||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  45774633 ttcgaaccccggaccttgcatattattatgtattgtttataccaactga 45774585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 9111105 - 9111047
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| |||||||||||||||||  |||||| ||||||||||||||||| ||||    
T  9111105 ttcgaaccccggaccttgcatatattatgcattgttcataccaactgaactaagctcac 9111047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 12700435 - 12700484
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  12700435 gaccttgcatatattatgcattgttcataccaactgaactaagctcacaa 12700484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 655752 - 655812
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||| |||||||||||||||||  |||||  ||||||||||| ||||| ||||||    
T  655752 ttcgaaccccggaccttgcatatattatgcattgtcgataccaactgagctaagctcacaa 655812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 34701194 - 34701147
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||||||||||  ||||||  |||||||||||||||||||||    
T  34701194 gaccttgcatatattatgcattgttcctaccaactgaactaagttcac 34701147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 7730692 - 7730664
Alignment:
Q  208 attgtttataccaactgaactaagttcac 236  Q
    |||||||||||||||||||||||||||||    
T  7730692 attgtttataccaactgaactaagttcac 7730664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 25441506 - 25441567
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||| |||||||||||||||||  |||||  ||||||||||| ||||||||||||||||    
T  25441506 gaaccccagaccttgcatatattatgcattgtccataccaactgagctaagttcacaaagac 25441567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 13042803 - 13042862
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    |||||||||| |||||||||||||||||| ||||| | |||||||||| ||||| |||||    
T  13042803 ttcgaaccccggaccttgcatatattataaattgtctttaccaactgagctaagctcaca 13042862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 13050880 - 13050939
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    |||||||||| |||||||||||||||||| ||||| | |||||||||| ||||| |||||    
T  13050880 ttcgaaccccggaccttgcatatattataaattgtctttaccaactgagctaagctcaca 13050939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 7938782 - 7938724
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| ||||||| |||||||||  |||||| ||||||||||||||||| ||||    
T  7938782 ttcgaaccccagaccttgtatatattatgcattgttcataccaactgaactaagctcac 7938724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 38894095 - 38894038
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttca 235  Q
    |||||||||| |||||||||||| ||||| |||||| ||| ||||||| |||||||||    
T  38894095 ttcgaaccccggaccttgcatattttatacattgttcatatcaactgagctaagttca 38894038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 25289328 - 25289376
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||| ||||||||||| ||||||| |||||||||| ||||||||||||    
T  25289328 accttacatatattatacattgtttttaccaactgagctaagttcacaa 25289376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 38330767 - 38330819
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||||||||||||| |||||||||||||| ||| ||||| |||| |||||    
T  38330767 accttgcatatattatatattgtttataccaattgagctaagctcacgaagac 38330819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 39408267 - 39408327
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||| |||||||||||||||||| ||| |||| | ||| ||||||||| ||||||    
T  39408267 ttcgaaccccagaccttgcatatattatacattatttaaatcaattgaactaagctcacaa 39408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 53996357 - 53996297
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||| |||||||||||||||||  |||||  ||||||||||| ||||| ||||||    
T  53996357 ttcgaaccccagaccttgcatatattatgcattgtccataccaactgagctaagctcacaa 53996297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 1743993 - 1744051
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||||||||  ||||||||||||||||  |||||  |||||||||||| |||||||||    
T  1743993 ttcgaaccccgaaccttgcatatattatgtattgtccataccaactgaattaagttcac 1744051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 31214681 - 31214628
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    |||||| ||||||||||  ||| ||| |||||||| ||||||||||||||||||    
T  31214681 gaccttacatatattatgcattatttctaccaacttaactaagttcacaaagac 31214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 52576005 - 52575952
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaag 231  Q
    |||||||||| |||||||||||| ||||  |||||| ||||||||||| |||||    
T  52576005 ttcgaaccccagaccttgcatattttatgcattgttcataccaactgagctaag 52575952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 6901469 - 6901521
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||||||||||||| ||||||  |||||||||| ||||| |||| |||||    
T  6901469 accttgcatatattatacattgttcctaccaactgagctaagctcactaagac 6901521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 19468509 - 19468445
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    |||||||| | |||||||||||||||||  |||||  |||||||||||  |||| ||||||||||    
T  19468509 ttcgaaccacggaccttgcatatattatgcattgtccataccaactgagttaagctcacaaagac 19468445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 9522970 - 9522912
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||||||||  ||||||||||||||||  |||||| ||||||||||| ||||||||||    
T  9522970 ttcgaaccccaaaccttgcatatattatgcattgttcataccaactgagctaagttcac 9522912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 37624601 - 37624554
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactga 225  Q
    ||||||||||||||||||||||||||||  |||||  |||||||||||    
T  37624601 ttcgaacccccgaccttgcatatattatgcattgtccataccaactga 37624554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 39280824 - 39280879
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||||| |||||||||||||||||  ||||||  |||||||||| ||||||||||    
T  39280824 gaaccccggaccttgcatatattatgcattgttcttaccaactgagctaagttcac 39280879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 7872751 - 7872809
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| |||||||||||||||||  |||||   |||||||||| ||||||||||    
T  7872751 ttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagttcac 7872809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 27279418 - 27279464
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  27279418 accttacatatattatacattgtctatactaactgaactaagttcac 27279464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 41029330 - 41029272
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| |||||||||||||||||| |||||   |||||||||| ||||| ||||    
T  41029330 ttcgaaccccggaccttgcatatattatacattgtccttaccaactgagctaagctcac 41029272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 5483389 - 5483336
Alignment:
Q  178 ttcgaacccccgaccttgcatata-ttatagattgtttataccaactgaactaa 230  Q
    ||||||||| |||||||||||||| ||||| |||||||||| ||||||| ||||    
T  5483389 ttcgaacccgcgaccttgcatatatttatacattgtttatatcaactgagctaa 5483336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 7670489 - 7670428
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    ||||||| |||||||||||||||||  |||||| | ||||||||| ||||| |||| |||||    
T  7670489 gaaccccggaccttgcatatattatgcattgttcaaaccaactgagctaagctcacgaagac 7670428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 44410656 - 44410603
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaag 231  Q
    |||||||||| ||||||| |||||||||| |||||  || ||||||||||||||    
T  44410656 ttcgaaccccggaccttgtatatattatacattgtccatgccaactgaactaag 44410603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 30296388 - 30296332
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    ||||||| |||||||||||||||||| |||||   |||||||||| ||||| |||||    
T  30296388 gaaccccagaccttgcatatattatacattgtccttaccaactgagctaagctcaca 30296332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 36765557 - 36765501
Alignment:
Q  178 ttcgaacccccgaccttgcatata-ttatagattgtttataccaactgaactaagtt 233  Q
    ||||||||| |||||||||||||| ||||| ||||| |||| ||||||| |||||||    
T  36765557 ttcgaacccgcgaccttgcatatatttatacattgtctatatcaactgagctaagtt 36765501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 36769209 - 36769153
Alignment:
Q  178 ttcgaacccccgaccttgcatata-ttatagattgtttataccaactgaactaagtt 233  Q
    ||||||||| |||||||||||||| ||||| ||||| |||| ||||||| |||||||    
T  36769209 ttcgaacccgcgaccttgcatatatttatacattgtctatatcaactgagctaagtt 36769153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 29872186 - 29872232
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttca 235  Q
    |||||||||||||||||  |||||| |||||||||||||||||||||    
T  29872186 gaccttgcatatattatgtattgttcataccaactgaactaagttca 29872232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 26999157 - 26999110
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||||||||||  ||||| | |||||||||||||||||||||    
T  26999157 gaccttgcatatattatgcattgtctctaccaactgaactaagttcac 26999110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 25598565 - 25598623
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||  |||||||||||||||||  |||||  ||||||||||| ||||||||||    
T  25598565 ttcgaaccctggaccttgcatatattatgcattgtccataccaactgagctaagttcac 25598623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 34912638 - 34912584
Alignment:
Q  178 ttcgaacccccgaccttgcatata-ttatagattgtttataccaactgaactaag 231  Q
    ||||||||| |||||||||||||| ||||| ||||| |||| |||||||||||||    
T  34912638 ttcgaacccgcgaccttgcatatatttatacattgtctatatcaactgaactaag 34912584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 13196757 - 13196700
Alignment:
Q  179 tcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||  ||||||||||||||||  |||||| |||||||||||  |||||||||    
T  13196757 tcgaaccccgaaccttgcatatattatgcattgttcataccaactgagttaagttcac 13196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 18557166 - 18557105
Alignment:
Q  177 tttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||||| | ||||||||| |||||||| | ||||  |||||||||| ||||||||||||    
T  18557166 tttcgaacctcagaccttgcagatattatacactgttattaccaactgagctaagttcacaa 18557105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 833076 - 833132
Alignment:
Q  182 aacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||| |||||||||||||||||  |||||  ||||||||||| || |||||||||    
T  833076 aaccccagaccttgcatatattatgcattgtccataccaactgagctgagttcacaa 833132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 18782544 - 18782588
Alignment:
Q  179 tcgaacccccgaccttgcatatattatagattgtttataccaact 223  Q
    ||||||||| |||||||||||||||||  ||||||| ||||||||    
T  18782544 tcgaaccccagaccttgcatatattatgcattgtttctaccaact 18782588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 30799102 - 30799150
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    |||||| ||||||||||  ||||||| ||||||||||| ||||||||||    
T  30799102 gaccttacatatattatgcattgtttctaccaactgaaataagttcaca 30799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 37670499 - 37670543
Alignment:
Q  193 ttgcatatattatagattgtttataccaactgaactaagttcaca 237  Q
    |||||||||||||| ||||||  |||||||||| |||||||||||    
T  37670499 ttgcatatattatacattgttcttaccaactgagctaagttcaca 37670543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 22941239 - 22941198
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaa 230  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  22941239 gaccttgcatatattataaattgttcataccaactgaactaa 22941198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 24195304 - 24195247
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||| |||||||||||||||||  |||||| ||| ||||||| ||||||||||||    
T  24195304 gaaccccggaccttgcatatattatgtattgttcatatcaactgagctaagttcacaa 24195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 20469326 - 20469372
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    ||||||||||||||||  |||||||||||||||||| ||||| ||||    
T  20469326 accttgcatatattatgcattgtttataccaactgatctaagctcac 20469372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 40679735 - 40679793
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaa 239  Q
    ||||||| |||||||||||| ||||| ||||   ||||||||||| |||||||||||||    
T  40679735 gaaccccggaccttgcatattttatatattgaccataccaactgagctaagttcacaaa 40679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 42932243 - 42932293
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaag 240  Q
    ||||| ||||||||||| |||||||||||||| ||||||||  ||||||||    
T  42932243 accttacatatattatacattgtttataccaagtgaactaaactcacaaag 42932293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 9055412 - 9055465
Alignment:
Q  182 aacccccgaccttgcatatattatagattgtttataccaactgaactaagttca 235  Q
    |||||| |||||||||||||||||| ||| ||| || ||||||| |||||||||    
T  9055412 aaccccagaccttgcatatattatacattatttttatcaactgagctaagttca 9055465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 19734361 - 19734304
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaagactttca 247  Q
    ||||||||||||||||  |||||| | ||||||||| ||||||| |||| ||||||||    
T  19734361 accttgcatatattatgtattgttcaaaccaactgagctaagtttacaaggactttca 19734304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 32421624 - 32421567
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||| |||||||||||||||||| |||||  |||||||||||  |||| ||||||    
T  32421624 gaaccccggaccttgcatatattatatattgtccataccaactgagttaagctcacaa 32421567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 40795432 - 40795375
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||  |||| ||||||    
T  40795432 gaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctcacaa 40795375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 42829478 - 42829543
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagact 243  Q
    |||||||||| |||||||||||| |||||  ||||  ||||||||||| |||||  ||||||||||    
T  42829478 ttcgaaccccagaccttgcatattttatattttgtccataccaactgagctaagcccacaaagact 42829543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 8148441 - 8148497
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaaagacttt 245  Q
    |||||||||||||||||| |||||  ||||||| ||| ||||| |||| ||||||||    
T  8148441 gaccttgcatatattatacattgtccataccaattgagctaagatcacgaagacttt 8148497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 26914074 - 26914138
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagac 242  Q
    |||||||||| |||||| ||||| ||||| ||| | |||| ||||||||||||| |||| |||||    
T  26914074 ttcgaaccccagaccttacatattttatacattatctatagcaactgaactaagctcacgaagac 26914138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 27134426 - 27134470
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactga 225  Q
    ||||||| ||| |||||||||||||| |||||| |||||||||||    
T  27134426 gaaccccggactttgcatatattatacattgttcataccaactga 27134470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 30427778 - 30427726
Alignment:
Q  189 gaccttgcatatattatagattgtttataccaactgaactaagttcacaaaga 241  Q
    |||||||||||||||||  |||||  ||||||||||| ||||| |||||||||    
T  30427778 gaccttgcatatattatgcattgtccataccaactgagctaagctcacaaaga 30427726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 31708149 - 31708196
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactga 225  Q
    |||||||||| |||||||||||||||||  |||||| |||||||||||    
T  31708149 ttcgaaccccagaccttgcatatattatgcattgttcataccaactga 31708196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 37932388 - 37932330
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||||||||| |||||||||||||||||  |||||  ||||||||||| ||||| ||||    
T  37932388 ttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcac 37932330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 12190047 - 12189990
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||||||| ||||||||||  |||||  ||||||||| | ||||||||||||    
T  12190047 gaacccccgaccttacatatattatgtattgtccataccaactaagctaagttcacaa 12189990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 14188353 - 14188398
Alignment:
Q  193 ttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||||||||| ||||||  ||||||||||||||||| ||||||    
T  14188353 ttgcatatattatggattgtccataccaactgaactaagctcacaa 14188398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 27903168 - 27903119
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaa 230  Q
    |||||||  ||||||||||||||||  |||||| ||||||||||||||||    
T  27903168 gaaccccgaaccttgcatatattatgcattgttcataccaactgaactaa 27903119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 31602840 - 31602889
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaaa 239  Q
    ||||||||||||||||  |||||| ||||||||||| ||||| |||||||    
T  31602840 accttgcatatattatgcattgttcataccaactgagctaaggtcacaaa 31602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 10704337 - 10704401
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaaagacttt 245  Q
    ||||||| |||||||||||| ||||  |||||  ||||||||||| ||||| |||||| ||||||    
T  10704337 gaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacaaggacttt 10704401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 13864399 - 13864355
Alignment:
Q  181 gaacccccgaccttgcatatattatagattgtttataccaactga 225  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||    
T  13864399 gaaccccggaccttgcatatattatgtattgttcataccaactga 13864355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 32675296 - 32675356
Alignment:
Q  178 ttcgaacccccgaccttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    |||||||||  |||||||||||||||||  ||||||  | |||||||||||||| ||||||    
T  32675296 ttcgaaccctagaccttgcatatattatgcattgttcttgccaactgaactaagctcacaa 32675356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 33645699 - 33645739
Alignment:
Q  185 ccccgaccttgcatatattatagattgtttataccaactga 225  Q
    |||||||||||||||||||||| |||||  |||||||||||    
T  33645699 ccccgaccttgcatatattatacattgtccataccaactga 33645739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 37147048 - 37147000
Alignment:
Q  178 ttcgaacccccgaccttgcatata-ttatagattgtttataccaactga 225  Q
    ||||||||| |||||||||||||| ||||| |||||||||| |||||||    
T  37147048 ttcgaacccgcgaccttgcatatatttatacattgtttatatcaactga 37147000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37791178 - 37791226
Alignment:
Q  190 accttgcatatattatagattgtttataccaactgaactaagttcacaa 238  Q
    ||||||||||||||||   |||||| |||||||||||||||| ||||||    
T  37791178 accttgcatatattatgcgttgtttctaccaactgaactaagctcacaa 37791226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 43359090 - 43359134
Alignment:
Q  192 cttgcatatattatagattgtttataccaactgaactaagttcac 236  Q
    |||| |||||||||| ||||||| |||||||| ||||||||||||    
T  43359090 cttgtatatattatacattgtttctaccaactaaactaagttcac 43359134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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