View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6551_low_5 (Length: 476)

Name: NF6551_low_5
Description: NF6551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6551_low_5
NF6551_low_5
[»] chr8 (9 HSPs)
chr8 (190-461)||(19647731-19648002)
chr8 (190-450)||(192936-193196)
chr8 (190-450)||(720540-720800)
chr8 (190-450)||(881647-881907)
chr8 (1-105)||(19648087-19648192)
chr8 (190-329)||(44239793-44239932)
chr8 (21-92)||(193298-193369)
chr8 (21-92)||(720902-720973)
chr8 (21-92)||(882009-882080)
[»] chr1 (7 HSPs)
chr1 (190-461)||(4345527-4345798)
chr1 (190-427)||(46407061-46407298)
chr1 (1-105)||(4345883-4345987)
chr1 (196-427)||(35605899-35606131)
chr1 (237-440)||(35570242-35570445)
chr1 (34-95)||(35570021-35570082)
chr1 (6-92)||(46407399-46407485)
[»] chr4 (14 HSPs)
chr4 (190-461)||(22698271-22698542)
chr4 (190-461)||(22981988-22982259)
chr4 (190-461)||(22995575-22995846)
chr4 (190-450)||(24036488-24036748)
chr4 (1-105)||(22698627-22698731)
chr4 (1-105)||(22981799-22981903)
chr4 (1-105)||(22995386-22995490)
chr4 (202-427)||(52057167-52057392)
chr4 (237-440)||(16565088-16565291)
chr4 (190-332)||(56560176-56560318)
chr4 (239-440)||(15618394-15618596)
chr4 (34-95)||(16565447-16565508)
chr4 (21-92)||(24036315-24036386)
chr4 (6-92)||(56560419-56560505)
[»] chr2 (11 HSPs)
chr2 (191-461)||(23361251-23361521)
chr2 (190-427)||(13895573-13895810)
chr2 (190-427)||(14036200-14036437)
chr2 (4-105)||(23361063-23361164)
chr2 (237-440)||(36311142-36311345)
chr2 (237-440)||(5917280-5917483)
chr2 (34-95)||(5917059-5917120)
chr2 (34-95)||(36311505-36311566)
chr2 (6-92)||(13895910-13895996)
chr2 (34-92)||(14380018-14380076)
chr2 (43-92)||(14036539-14036588)
[»] chr3 (6 HSPs)
chr3 (190-461)||(7011192-7011462)
chr3 (190-450)||(51125657-51125917)
chr3 (1-105)||(7011547-7011651)
chr3 (241-340)||(16247125-16247224)
chr3 (21-92)||(51125484-51125555)
chr3 (21-92)||(52692453-52692524)
[»] chr5 (7 HSPs)
chr5 (190-461)||(22809537-22809808)
chr5 (190-427)||(33232030-33232267)
chr5 (237-440)||(22481060-22481263)
chr5 (1-54)||(22809929-22809982)
chr5 (34-95)||(22481423-22481484)
chr5 (190-270)||(7072304-7072384)
chr5 (6-92)||(33232368-33232454)
[»] chr6 (6 HSPs)
chr6 (237-440)||(16547001-16547204)
chr6 (237-440)||(17831096-17831299)
chr6 (34-105)||(17830883-17830954)
chr6 (34-95)||(16547364-16547425)
chr6 (21-92)||(30019131-30019202)
chr6 (6-92)||(21515789-21515875)
[»] chr7 (4 HSPs)
chr7 (237-427)||(37638265-37638455)
chr7 (237-356)||(10373043-10373162)
chr7 (4-95)||(10372800-10372891)
chr7 (34-95)||(37638611-37638672)
[»] scaffold0394 (2 HSPs)
scaffold0394 (250-440)||(9084-9272)
scaffold0394 (34-95)||(6716-6777)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 190 - 461
Target Start/End: Complemental strand, 19648002 - 19647731
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19648002 cctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 19647903  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  19647902 taaagcacatgttccaatcacatacagccattacattttgtgtcggatatcccttttgtccaataaatctagtttggtcattggcactaaccacacaggg 19647803  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||    
T  19647802 aatatgcgtaccatcgattgctcctatggcattcttaaaaaatggccaatactgtggatcactttgaatttt 19647731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 190 - 450
Target Start/End: Complemental strand, 193196 - 192936
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| || || |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  193196 cctggcggagggtgtggaaaattaaggttcgcatttgtcaaagcctggtcaaaaacacgagcatcatgagcagtaccttcccaaccagctaatacaaaag 193097  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||  | ||||| ||| |  ||||||| ||||| |     
T  193096 tgaagcacatgttccaatcacatacatccattatattttgtgtagcatatccctttcttccaataaactttgtttgctcacttccactaactacacatga 192997  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatca 450  Q
     | ||| |||||| | ||||||||||| |||||||||| || ||| |||||| ||| ||||    
T  192996 cacatgtgtaccatcaattgctcctatagcattcttaaaaactggccaatatcgtggatca 192936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 190 - 450
Target Start/End: Complemental strand, 720800 - 720540
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| || || |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  720800 cctggcggagggtgtggaaaattaaggttcgcatttgtcaaagcctggtcaaaaacacgagcatcatgagcagtaccttcccaaccagctaatacaaaag 720701  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||  | ||||| ||| |  ||||||| ||||| |     
T  720700 tgaagcacatgttccaatcacatacatccattatattttgtgtagcatatccctttcttccaataaactttgtttgctcacttccactaactacacatga 720601  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatca 450  Q
     | ||| |||||| | ||||||||||| |||||||||| || ||| |||||| ||| ||||    
T  720600 cacatgtgtaccatcaattgctcctatagcattcttaaaaactggccaatatcgtggatca 720540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 190 - 450
Target Start/End: Complemental strand, 881907 - 881647
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| || || |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  881907 cctggcggagggtgtggaaaattaaggttcgcatttgtcaaagcctggtcaaaaacacgagcatcatgagcagtaccttcccaaccagctaatacaaaag 881808  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||  | ||||| ||| |  ||||||| ||||| |     
T  881807 tgaagcacatgttccaatcacatacatccattatattttgtgtagcatatccctttcttccaataaactttgtttgctcacttccactaactacacatga 881708  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatca 450  Q
     | ||| |||||| | ||||||||||| |||||||||| || ||| |||||| ||| ||||    
T  881707 cacatgtgtaccatcaattgctcctatagcattcttaaaaactggccaatatcgtggatca 881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19648192 - 19648087
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataa-cgttcacatctgtatggaccaagataccccattggtgttggataaccggca 99  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  19648192 ttgttattttcaaacccatgagaacgccgaaaatcagggaggtgataaacgttcacatttgtatggaccaagatatcccatcggtgttggataaccggca 19648093  T
Q  100 tccacc 105  Q
    ||||||    
T  19648092 tccacc 19648087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 44239932 - 44239793
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| |||||||||||| | | ||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||    
T  44239932 cctggcggagggtgtggaaaattaagatttgcatttgttaaagcttggtcaaaaacacgagcatcatgagcagtaccttcccaaccagccaatacaaaag 44239833  T
Q  290 taaagcacatgttccaatcacatacatccattacattttg 329  Q
    | || ||||| ||||||||||||||  |||||||||||||    
T  44239832 tgaaacacatattccaatcacatacggccattacattttg 44239793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 193369 - 193298
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  193369 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 193298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 720973 - 720902
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  720973 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 720902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 882080 - 882009
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  882080 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 882009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 190 - 461
Target Start/End: Complemental strand, 4345798 - 4345527
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4345798 cctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 4345699  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  4345698 taaagcacatgttccaatcacatacagccattacattttgtgtcggatatccctttcgtccaataaatctagtttggtcattggcactaaccacacaggg 4345599  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    |||||| |||||| |||||||||||||||||||||||| |||||| |||||  ||| |||||||||||||||    
T  4345598 aatatgtgtaccatcgattgctcctatggcattcttaaaaaatggccaataccgtggatcactttgaatttt 4345527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 190 - 427
Target Start/End: Complemental strand, 46407298 - 46407061
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| |||||||||||| | | ||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||    
T  46407298 cctggcggagggtgtggaaaattaagatttgcatttgttaaagcttggtcaaaaacacgagcatcatgagcagtaccttcccaaccagccaatacaaaag 46407199  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | || ||||| ||||||||||||||  |||||||||||||||| ||||||||||||| | ||||||| || ||||| ||| || ||||||| || || |     
T  46407198 tgaaacacatattccaatcacatacggccattacattttgtgtaggatatccctttcttccaataaaccttgtttgctcactgccactaactacgcatga 46407099  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaa 427  Q
     | ||| |||||| | |||||||||||  |||||||||    
T  46407098 cacatgtgtaccatcaattgctcctatatcattcttaa 46407061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4345987 - 4345883
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcat 100  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4345987 ttgttattttcaaacccatgagaacgccgaaaatcagggaggtgataacgttcacatctgtatggaccaagatatcccatcggtgttggataaccggcat 4345888  T
Q  101 ccacc 105  Q
    |||||    
T  4345887 ccacc 4345883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 196 - 427
Target Start/End: Complemental strand, 35606131 - 35605899
Alignment:
Q  196 ggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagc 295  Q
    ||||| ||||||||||| || ||||||||| | | ||| ||||||||||||||||||||||| |||||||||||||| ||| | || |||||||| || |    
T  35606131 ggagggtgtggaaaattaaggtttgcatttgtcaaagcttggtcaaaaacacgagcatcatgagcagtaccttcccaaccaaccaatacaaaagtgaaac 35606032  T
Q  296 acatgttccaatcacatacatccattacattttg-tgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatat 394  Q
    |||| || |||||||||||| ||||||||||||| ||| ||||||| ||||| | ||||||| || ||||| ||| || ||||||| || || |  | ||    
T  35606031 acatatttcaatcacatacagccattacattttgttgtaggatatctctttcttccaataaaccttgtttgctcactgccactaactacgcatgacacat 35605932  T
Q  395 gcgtaccaacgattgctcctatggcattcttaa 427  Q
    | |||||| | ||||||||||| ||||||||||    
T  35605931 gtgtaccatcaattgctcctatagcattcttaa 35605899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 440
Target Start/End: Original strand, 35570242 - 35570445
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  35570242 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaatacaaaagtgaaacacatattccaatcacatacagccataatattttgtgttgga 35570341  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |    
T  35570342 tatccttttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcc 35570441  T
Q  437 aata 440  Q
    ||||    
T  35570442 aata 35570445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 35570021 - 35570082
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  35570021 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 35570082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 46407485 - 46407399
Alignment:
Q  6 attttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    |||| ||||||| | ||||| || ||| ||||| || ||||| ||||||  ||||||||||||||  ||||| ||||||||||||||    
T  46407485 atttgcaaacccgttagaacgcctaaattcaggaagatgataccgttcatgtctgtatggaccaatgtaccctattggtgttggata 46407399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 190 - 461
Target Start/End: Complemental strand, 22698542 - 22698271
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22698542 cctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccggctaaaacaaaag 22698443  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  22698442 taaagcacatgttccaatcacatacagccattacattttgtgtcggatatccctttcgtccaataaatctagtttggtcattggcactaaccacacaggg 22698343  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    ||||||||||||| |||||||||||||||||||||||| | |||| |||||  ||| |||||||||||||||    
T  22698342 aatatgcgtaccatcgattgctcctatggcattcttaaaatatggtcaataccgtggatcactttgaatttt 22698271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 190 - 461
Target Start/End: Original strand, 22981988 - 22982259
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22981988 cctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccggctaaaacaaaag 22982087  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  22982088 taaagcacatgttccaatcacatacagccattacattttgtgtcggatatccctttcgtccaataaaactagtttggtcattggcactaaccacacaggg 22982187  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    ||||||||||||| |||||||||||||||||||||||| | |||| |||||  ||| |||||||||||||||    
T  22982188 aatatgcgtaccatcgattgctcctatggcattcttaaaatatggtcaataccgtggatcactttgaatttt 22982259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 190 - 461
Target Start/End: Original strand, 22995575 - 22995846
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22995575 cctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccggctaaaacaaaag 22995674  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  22995675 taaagcacatgttccaatcacatacagccattacattttgtgtcggatatccctttcgtccaataaaactagtttggtcattggcactaaccacacaggg 22995774  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    ||||||||||||| |||||||||||||||||||||||| | |||| |||||  ||| |||||||||||||||    
T  22995775 aatatgcgtaccatcgattgctcctatggcattcttaaaatatggtcaataccgtggatcactttgaatttt 22995846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 190 - 450
Target Start/End: Original strand, 24036488 - 24036748
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| || || |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  24036488 cctggcggagggtgtggaaaattaaggttcgcatttgtcaaagcctggtcaaaaacacgagcatcatgagcagtaccttcccaaccagctaatacaaaag 24036587  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | |||||||||||||||||||||||| |||||| ||||||||| | ||||||||||| | |||||||  | ||||| ||| |  ||||||| ||||| |     
T  24036588 tgaagcacatgttccaatcacatacagccattatattttgtgtagcatatccctttcttccaataaactttgtttgctcacttccactaactacacatga 24036687  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatca 450  Q
     | ||| |||||| | ||||||||||| |||||||||| |||||| |||||| ||| ||||    
T  24036688 cacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatca 24036748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 22698731 - 22698627
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcat 100  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22698731 ttgttattttcaaacccatgagaacgccgaaaatcagggaggtgataacgttcacatctgtatggaccaagatatcccatcggtgttggataaccggcat 22698632  T
Q  101 ccacc 105  Q
    |||||    
T  22698631 ccacc 22698627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22981799 - 22981903
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcat 100  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22981799 ttgttattttcaaacccatgagaacgccgaaaatcagggaggtgataacgttcacatctgtatggaccaagatatcccatcggtgttggataaccggcat 22981898  T
Q  101 ccacc 105  Q
    |||||    
T  22981899 ccacc 22981903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22995386 - 22995490
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcat 100  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  22995386 ttgttattttcaaacccatgagaacgccgaaaatcagggaggtgataacgttcacatctgtatggaccaagatatcccatcggtgttggataaccggcat 22995485  T
Q  101 ccacc 105  Q
    |||||    
T  22995486 ccacc 22995490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 202 - 427
Target Start/End: Original strand, 52057167 - 52057392
Alignment:
Q  202 tgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgt 301  Q
    ||||||||||| |||||||||||| | | ||| |||| |||||||||||||||||| |||||||||| ||| ||||| || |||||||| || ||||| |    
T  52057167 tgtggaaaattaagatttgcatttgtcaaagcttggtaaaaaacacgagcatcatgagcagtacctttccaaccagccaatacaaaagtgaaacacatat 52057266  T
Q  302 tccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtacc 401  Q
    |||||||||||||  ||||||||||||| || ||||||||||||| | ||||||| || ||||| ||| || | ||||| || || |  | ||| |||||    
T  52057267 tccaatcacatacggccattacattttgcgtaggatatccctttcttccaataaaccttgtttgctcactgcccctaactacgcatgacacatgtgtacc 52057366  T
Q  402 aacgattgctcctatggcattcttaa 427  Q
    | | ||||||||||| ||||| ||||    
T  52057367 atcaattgctcctatagcatttttaa 52057392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 440
Target Start/End: Complemental strand, 16565291 - 16565088
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| | |||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  16565291 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaataaaaaagtgaaacacatattccaatcacatacaaccataatattttgtgttgga 16565192  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |    
T  16565191 tatccttttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcc 16565092  T
Q  437 aata 440  Q
    ||||    
T  16565091 aata 16565088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 332
Target Start/End: Complemental strand, 56560318 - 56560176
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| |||||||||||| | | ||| |||| |||||||||||||||||| | ||||| |||||| ||||| || |||||||    
T  56560318 cctggcggagggtgtggaaaattaagatttgcatttgttaaagcttggtaaaaaacacgagcatcatgaggagtactttcccaaccagccaatacaaaag 56560219  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgt 332  Q
    | || ||||| ||||||||||||||  ||||||||||||||||    
T  56560218 tgaaacacatattccaatcacatacggccattacattttgtgt 56560176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 440
Target Start/End: Complemental strand, 15618596 - 15618394
Alignment:
Q  239 caaaaacacgagcatcatggg-cagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcggat 337  Q
    |||||||| | |||||||||| |||| | |||||| |||| ||| |||||||| || ||||| ||  ||||||||||| |||| | ||||||||| ||||    
T  15618596 caaaaacatgggcatcatggggcagtgctttcccaaccagataatacaaaagtgaaacacatattttaatcacatacaaccataatattttgtgttggat 15618497  T
Q  338 atccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggaca 437  Q
    |||| |||| | ||||||| || | ||  ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || ||    
T  15618496 atccttttcttccaataaaccttggtttctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcca 15618397  T
Q  438 ata 440  Q
    |||    
T  15618396 ata 15618394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 16565508 - 16565447
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  16565508 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 16565447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 24036315 - 24036386
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  24036315 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 24036386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 56560505 - 56560419
Alignment:
Q  6 attttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    |||| ||||||| | ||||| || ||| ||||| || ||||| ||||||  ||||||||||||||  ||||| ||||||||||||||    
T  56560505 atttgcaaacccgttagaacgcctaaattcaggaagatgataccgttcatgtctgtatggaccaatgtaccctattggtgttggata 56560419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 191 - 461
Target Start/End: Original strand, 23361251 - 23361521
Alignment:
Q  191 ctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagt 290  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361251 ctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagt 23361350  T
Q  291 aaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggga 390  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  23361351 aaagcacatgttccaatcacatacaaccattacattttgtgtcagatatcactttcgtctaataaatctagtttgatcattggcactaaccacacaggga 23361450  T
Q  391 atatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    |||||||||||| |||||||||||||||||||||||| |||||| |||||  ||| |||||||||||||||    
T  23361451 atatgcgtaccatcgattgctcctatggcattcttaaaaaatggccaataccgtggatcactttgaatttt 23361521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 190 - 427
Target Start/End: Complemental strand, 13895810 - 13895573
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| |||||||||||| | | ||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||    
T  13895810 cctggcggagggtgtggaaaattaagatttgcatttgttaaagcttggtcaaaaacacgagcatcatgagcagtaccttcccaaccagccaatacaaaag 13895711  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | || ||||| ||||||||||||||  |||||||||||||||| ||||||||||||| | ||||||| || ||||| ||| || ||||||| || || |     
T  13895710 tgaaacacatattccaatcacatacggccattacattttgtgtaggatatccctttcttccaataaaccttgtttgctcactgccactaactacgcatga 13895611  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaa 427  Q
     | ||| |||||| | |||||||||||  |||||||||    
T  13895610 cacatgtgtaccatcaattgctcctataacattcttaa 13895573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 190 - 427
Target Start/End: Complemental strand, 14036437 - 14036200
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| || || |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  14036437 cctggcggagggtgtggaaaattaaggttcgcatttgtcaaagcctggtcaaaaacacgagcatcatgagcagtaccttcccaaccagctaatacaaaag 14036338  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | |||||||||||||||||||||||| |||||| ||||||||| | ||||||||||| | |||||||  | ||||| ||| |  ||||||| ||||| |     
T  14036337 tgaagcacatgttccaatcacatacagccattatattttgtgtagcatatccctttcttccaataaactttgtttgctcacttccactaactacacatga 14036238  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaa 427  Q
     | ||| |||||| | |||||||||||  |||||||||    
T  14036237 cacatgtgtaccatcaattgctcctatatcattcttaa 14036200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 23361063 - 23361164
Alignment:
Q  4 ttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcatcca 103  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23361063 ttattttcaaacccatgagaatgccgaaaatcagggaggtgataacgttcacatctgtatggaccaagataccccatcggtgttggataaccggcatcca 23361162  T
Q  104 cc 105  Q
    ||    
T  23361163 cc 23361164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 440
Target Start/End: Complemental strand, 36311345 - 36311142
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  36311345 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaatacaaaagtgaaacacatattccaatcacatacagccataatattttgtgttgga 36311246  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |    
T  36311245 tatccttttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcc 36311146  T
Q  437 aata 440  Q
    ||||    
T  36311145 aata 36311142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 440
Target Start/End: Original strand, 5917280 - 5917483
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  5917280 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaatacaaaagtgaaacacatattccaatcacatacagccataatattttgtgttgga 5917379  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||| ||||||| |||||||||| ||| || |    
T  5917380 tatccttttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattactcctatagcattcttaaaaaaaggcc 5917479  T
Q  437 aata 440  Q
    ||||    
T  5917480 aata 5917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 5917059 - 5917120
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  5917059 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 5917120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 36311566 - 36311505
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  36311566 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 36311505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 13895996 - 13895910
Alignment:
Q  6 attttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    |||| ||||||| | ||||| || ||| ||||| || ||||| ||||||  ||||||||||||||  ||||| ||||||||||||||    
T  13895996 atttgcaaacccgttagaacgcctaaattcaggaagatgatatcgttcatgtctgtatggaccaatgtaccctattggtgttggata 13895910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 14380076 - 14380018
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  14380076 tcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 14380018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 14036588 - 14036539
Alignment:
Q  43 tgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  14036588 tgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 14036539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 190 - 461
Target Start/End: Complemental strand, 7011462 - 7011192
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  7011462 cctggaggaggatgtggaaaatttagatttgcatttgtgagagcatggtcaaaaacacgagcatcatgggcactaccttcccatccagctaaaacaaa-g 7011364  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  7011363 taaagcaaatgttccaatcacatacagccattacattttgtgtcggatatccctttcgtccaataaatctagtttggtcattggcactaaccacacaggg 7011264  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||    
T  7011263 aatatgcgtaccatcgattgctcctatggcattcttaaaaaatggccaatatcgtggatcactttgaatttt 7011192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 190 - 450
Target Start/End: Original strand, 51125657 - 51125917
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| || || |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  51125657 cctggcggagggtgtggaaaattaaggttcgcatttgtcaaagcctggtcaaaaacacgagcatcatgagcagtaccttcccaaccagctaatacaaaag 51125756  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||  | ||||| ||| |  ||||||| ||||| |     
T  51125757 tgaagcacatgttccaatcacatacatccattatattttgtgtagcatatccctttcttccaataaactttgtttgctcacttccactaactacacatga 51125856  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatca 450  Q
     | ||| |||||| | ||||||||||| |||||||||| |||||| |||||| ||| ||||    
T  51125857 cacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatca 51125917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7011651 - 7011547
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcat 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  7011651 ttgttattttcaaacccatgagaacaccgaaaatcagggaggtgataacattcacatctgtatggaccaagatatcccatcggtgttggataaccggcat 7011552  T
Q  101 ccacc 105  Q
    |||||    
T  7011551 ccacc 7011547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 16247125 - 16247224
Alignment:
Q  241 aaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcggatatc 340  Q
    ||||||||||| | ||||||||||| || ||| |||||||| |||||||| || ||||| |||||||||||||||||||| | ||||||||| |||||||    
T  16247125 aaaacacgagcgttatgggcagtacttttccaaccagctaatacaaaagtgaaacacatattccaatcacatacatccataatattttgtgtaggatatc 16247224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 51125484 - 51125555
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  51125484 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 51125555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 52692524 - 52692453
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  52692524 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 52692453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 190 - 461
Target Start/End: Complemental strand, 22809808 - 22809537
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22809808 cctggaggaggatgtggaaaatttagatttgcatttgtgggagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 22809709  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  22809708 taaaacacatgttccaatcacataaatccattacattttgtgtcggatatccctttcatccaataaatctagtttgatcattggcactaactacacaggg 22809609  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaatattgtgtatcactttgaatttt 461  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||| |||||  ||| |||||||||||||||    
T  22809608 aatatgcgtaccatcgattgctcctatgacattcttaaaaaatggccaataccgtggatcactttgaatttt 22809537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 190 - 427
Target Start/End: Complemental strand, 33232267 - 33232030
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaag 289  Q
    ||||| ||||| ||||||||||| |||||||||||| | | ||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||||    
T  33232267 cctggcggagggtgtggaaaattaagatttgcatttgttaaagcttggtcaaaaacacgagcatcatgagcagtaccttcccaaccagcaaatacaaaag 33232168  T
Q  290 taaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgttcaataaatctagtttgatcattggcactaaccacacaggg 389  Q
    | || ||||| ||||||||||||||  |||||||||||||||| ||||||||||||| | ||||||| || ||||| ||| || ||||||| || || |     
T  33232167 tgaaacacatattccaatcacatacggccattacattttgtgtaggatatccctttcttccaataaaccttgtttgctcactgccactaactacgcatga 33232068  T
Q  390 aatatgcgtaccaacgattgctcctatggcattcttaa 427  Q
     | ||| |||||| | ||||||||||| ||||||||||    
T  33232067 cacatgtgtaccatcaattgctcctatagcattcttaa 33232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 440
Target Start/End: Complemental strand, 22481263 - 22481060
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  22481263 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaatacaaaagtgaaacacatattccaatcacatacagccataatattttgtgttgga 22481164  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |    
T  22481163 tatccttttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcc 22481064  T
Q  437 aata 440  Q
    ||||    
T  22481063 aata 22481060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22809982 - 22809929
Alignment:
Q  1 ttgttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttca 54  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  22809982 ttgttattttcaaacccatgagaacgccgaaaatcagggaggtgataacgttca 22809929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 22481484 - 22481423
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  22481484 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 22481423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 7072304 - 7072384
Alignment:
Q  190 cctggaggaggatgtggaaaatttagatttgcatttttgagagcatggtcaaaaacacgagcatcatgggcagtaccttcc 270  Q
    ||||| ||||| | ||||||||| |||||||||||| | | ||| |||||| |||||||||||||||| | ||||||||||    
T  7072304 cctggcggagggtatggaaaattaagatttgcatttgtcaaagcttggtcataaacacgagcatcatgagtagtaccttcc 7072384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 33232454 - 33232368
Alignment:
Q  6 attttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    |||| ||||||| | ||||| || ||| ||||| || ||||| ||||||  ||||||||||||||  ||||| ||||||||||||||    
T  33232454 atttgcaaacccgttagaacgcctaaattcaggaagatgataccgttcatgtctgtatggaccaatgtaccctattggtgttggata 33232368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 440
Target Start/End: Complemental strand, 16547204 - 16547001
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  16547204 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaatacaaaagtgaaacacatattccaatcacatacagccataatattttgtgttgga 16547105  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |    
T  16547104 tatccttttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcc 16547005  T
Q  437 aata 440  Q
    ||||    
T  16547004 aata 16547001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 237 - 440
Target Start/End: Original strand, 17831096 - 17831299
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    ||||||||||||  ||||||||||||| |||||| | |||||||| |||||||| || || || ||||||||||||||| |||| | ||||||||| |||    
T  17831096 gtcaaaaacacggacatcatgggcagtgccttccgaaccagctaatacaaaagtgaaacatatattccaatcacatacagccataatattttgtgttgga 17831195  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggac 436  Q
    ||||| |||  | ||||||| || | ||| ||| | ||||||||  |||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |    
T  17831196 tatccttttattccaataaaccttggttgctcactagcactaacttcacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggcc 17831295  T
Q  437 aata 440  Q
    ||||    
T  17831296 aata 17831299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 17830883 - 17830954
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataaccggcatccacc 105  Q
    ||||| || ||||||||||||||||| |||||||||| |||||| ||||||||||||||||| | |||||||    
T  17830883 tcaggaagatgataacgttcacatctatatggaccaatataccctattggtgttggataaccagaatccacc 17830954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 16547425 - 16547364
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  16547425 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 16547364  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 30019202 - 30019131
Alignment:
Q  21 agaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    ||||| || ||| ||||| || ||||| ||||||||||| ||||||||||  ||||| ||||||||||||||    
T  30019202 agaacgcctaaattcaggaagatgatatcgttcacatctatatggaccaatgtaccctattggtgttggata 30019131  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 21515789 - 21515875
Alignment:
Q  6 attttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggata 92  Q
    |||| ||||||| | ||||| || ||| ||||| || ||||| ||||||  ||||||||||||||  ||||| ||||||||||||||    
T  21515789 atttgcaaacccgttagaacgcctaaattcaggaagatgataccgttcatgtctgtatggaccaatgtaccctattggtgttggata 21515875  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 237 - 427
Target Start/End: Complemental strand, 37638455 - 37638265
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| ||| |||| |||||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  37638455 gtcaaaaacacgggcatcatgggcagtgccttcccaaccacctaatacaaaagtgaaacacatattccaatcacatacaaccataatattttgtgttgga 37638356  T
Q  337 tatccctttcgttcaataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaa 427  Q
    ||||  |||| | ||||||| || | ||| ||| | |||||||| ||||| |  | ||| ||| || | ||||||||||| ||||||||||    
T  37638355 tatcattttcttccaataaaccttggttgctcactagcactaactacacatgacacatgtgtaacatcaattgctcctatagcattcttaa 37638265  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 10373043 - 10373162
Alignment:
Q  237 gtcaaaaacacgagcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcgga 336  Q
    |||||||||||| |||||||||||||| |||||||| |||||||| | |||||| || ||||| ||||||||||||||| |||| | ||||||||| |||    
T  10373043 gtcaaaaacacgggcatcatgggcagtgccttcccaaccagctaatataaaagtgaaacacatattccaatcacatacagccataatattttgtgttgga 10373142  T
Q  337 tatccctttcgttcaataaa 356  Q
    ||||| |||| | |||||||    
T  10373143 tatccttttcttccaataaa 10373162  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 10372800 - 10372891
Alignment:
Q  4 ttattttcaaacccatgagaacaccgaaagtcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    |||||||||||||||   || | || ||| ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  10372800 ttattttcaaacccacttgagcgcctaaattcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 10372891  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 37638672 - 37638611
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  37638672 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 37638611  T

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Target: scaffold0394 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 440
Target Start/End: Original strand, 9084 - 9272
Alignment:
Q  250 gcatcatgggcagtaccttcccatccagctaaaacaaaagtaaagcacatgttccaatcacatacatccattacattttgtgtcggatatccctttcgtt 349  Q
    |||||||||||||| |||||||| ||  |||| |||||||| || ||||| ||||||||||||||| ||||   || |||||| |||||||  |||| |     
T  9084 gcatcatgggcagtgccttcccaacccactaatacaaaagtgaaacacatattccaatcacatacagccat--aatattgtgttggatatcattttcttc 9181  T
Q  350 caataaatctagtttgatcattggcactaaccacacagggaatatgcgtaccaacgattgctcctatggcattcttaagaaatggacaata 440  Q
    ||||||| || | ||| ||| | |||||||| ||||| |  | ||| |||||| | ||||||||||| |||||||||| ||| || |||||    
T  9182 caataaaccttggttgctcactagcactaactacacatgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaata 9272  T

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Target: scaffold0394; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 6716 - 6777
Alignment:
Q  34 tcagggaggtgataacgttcacatctgtatggaccaagataccccattggtgttggataacc 95  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  6716 tcaggaagatgataacgttcacatctatatggaccaatgtaccctattggtgttggataacc 6777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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